Site Hauts du Chazal
UMR 6249 Chrono-environnement
19 rue Ambroise Paré
25030 Besançon cedex
France
0009-0006-9113-1381 
ruben-ladeira
Bioinformatics – Metagenomics – Data mining – Microbiome
Presentation
After completing an internship in bioinformatics applied to microbiology at Danone Research & Innovation under the supervision of Julien Tap and Muriel Derrien, I joined the University Hospital Center of Besançon as a research engineer. My work focuses on analyzing sequencing data from tumors and human microbiomes. In close collaboration with the hepatology department, I contribute to a clinical study on the gut microbiome of patients with severe cirrhosis. Concurrently, I am a PhD student affiliated with the CNRS-UFC Chrono-environment laboratory, where my thesis focuses on studying human microbiomes and their association with health.
Phd thesis started in November 2024 under the supervision of Benoit Valot and the co-supervision of Didier Hocquet.
Subject : Study of microbiomes in association with human health using metagenomic and biostatistical approaches
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Publications
Journal articles
2023
- ref_biblio
- Ruben Ladeira, Julien Tap, Muriel Derrien. Exploring Bifidobacterium species community and functional variations with human gut microbiome structure and health beyond infancy. Microbiome Research Reports, 2023, 2 (2), pp.9. ⟨10.20517/mrr.2023.01⟩. ⟨hal-04059096⟩
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- ref_biblio
- Mathieu Schwartz, Valentin Boichot, Mariam Muradova, Pablo Fournier, Patrick Senet, et al.. Structure–activity analysis suggests an olfactory function for the unique antennal delta glutathione transferase of Apis mellifera. FEBS Letters, 2023, 597 (24), pp.3038-3048. ⟨10.1002/1873-3468.14770⟩. ⟨hal-04329230⟩
- Accès au texte intégral et bibtex
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