Benoit VALOT

Site Hauts du Chazal
UFR Sciences de la Santé
19, rue Ambroise Paré
25000 Besançon cedex 3, France

Benoit valot

Senior Engineer
PEA²t

benoit.valot@-Code to remove to avoid SPAM-univ-fcomte.fr
room R217

Following a PhD in proteomics, I worked for 8 years at the PAPPSO mass spectrometry platform in the Paris region. Following internal mobility, I joined the Chrono-Environnement laboratory in 2013. I am interested in high-throughput sequencing data processing.

Projects :

  • BIOSYSMO – BIOremediation systems exploiting SYnergieS for improved removal of mixed pollution – Ongoing from: 01/09/2022 → 31/08/2026.
  • EMBRASE – Environnement MicroBiologique et Risque Allergique, Suivi des Enfants à 5 ans – Completed: 23/01/2018 → 30/03/2022.

 

Journal articles

2024

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Ani Horikian, Audrey Jeanvoine, Abdallah Amarache, Morgane Tourtet, Jérôme Ory, et al.. High-risk clones of Pseudomonas aeruginosa contaminate the drinking water networks of French cities. npj Clean Water, 2024, 7, pp.35. ⟨10.1038/s41545-024-00323-8⟩. ⟨hal-04612386⟩
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https://hal.science/hal-04612386/file/2024_Horikian_npj-Clean-water_vol-7_art-35.pdf BibTex

2021

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Daniel Martak, Julia Guther, Tess Verschuuren, Benoit Valot, Nadine Conzelmann, et al.. Populations of extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae are different in human-polluted environment and food items: a multicentre European study. Clinical Microbiology and Infection, 2021, ⟨10.1016/j.cmi.2021.07.022⟩. ⟨hal-03360863⟩
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Marie Petitjean, Paulo Juarez, Alexandre Meunier, Etienne Daguindau, Hélène Puja, et al.. The rise and the fall of a Pseudomonas aeruginosa endemic lineage in a hospital. Microbial Genomics, 2021, 7 (9), ⟨10.1099/mgen.0.000629⟩. ⟨hal-03356587⟩
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Steffi Rocchi, Thomas Sewell, Benoit Valot, Chloé Godeau, Audrey Laboissiere, et al.. Molecular Epidemiology of Azole-Resistant Aspergillus fumigatus in France Shows Patient and Healthcare Links to Environmentally Occurring Genotypes. Frontiers in Cellular and Infection Microbiology, 2021, 11, pp.729476. ⟨10.3389/fcimb.2021.729476⟩. ⟨hal-03529832⟩
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Loïc Yung, Coralie Bertheau, Flavien Tafforeau, Cyril Zappelini, Benoit Valot, et al.. Partial overlap of fungal communities associated with nettle and poplar roots when co-occurring at a trace metal contaminated site. Science of the Total Environment, 2021, 782, ⟨10.1016/j.scitotenv.2021.146692⟩. ⟨hal-03192784⟩
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https://hal.science/hal-03192784/file/Yung%202020_STOTEN_Revised_marked_HAL%20version.pdf BibTex

2020

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Charlotte Couchoud, Xavier Bertrand, Benoît Valot, Didier Hocquet. Deciphering the role of insertion sequences in the evolution of bacterial epidemic pathogens with panISa software. Microbial Genomics, 2020, ⟨10.1099/mgen.0.000356⟩. ⟨hal-02539297⟩
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Farid El Garch, Myriam Youala, Shabbir Simjee, Hilde Moyaert, Rebecca Klee, et al.. Antimicrobial susceptibility of nine udder pathogens recovered from bovine clinical mastitis milk in Europe 2015–2016: VetPath results. Veterinary Microbiology, 2020, 245, pp.108644. ⟨10.1016/j.vetmic.2020.108644⟩. ⟨hal-03054008⟩
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Audrey Emery, Nadine Marpaux, Christian Naegelen, Benoit Valot, Pascal Morel, et al.. Genotypic study of Citrobacter koseri , an emergent platelet contaminant since 2012 in France. Transfusion, 2020, 60 (2), pp.245-249. ⟨10.1111/trf.15617⟩. ⟨hal-02541556⟩
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Marisa Haenni, Farid El Garch, Christine Miossec, Jean-Yves Madec, Didier Hocquet, et al.. High genetic diversity among methicillin-susceptible Staphylococcus pseudintermedius in dogs in Europe. Journal of Global Antimicrobial Resistance, 2020, 21, pp.57-59. ⟨10.1016/j.jgar.2020.02.016⟩. ⟨hal-02541555⟩
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Alexandre Luscher, Juliette Simonin, Léna Falconnet, Benoit B. Valot, Didier Hocquet, et al.. Combined Bacteriophage and Antibiotic Treatment Prevents Pseudomonas aeruginosa Infection of Wild Type and cftr- Epithelial Cells. Frontiers in Microbiology, 2020, 11, pp.1947. ⟨10.3389/fmicb.2020.01947⟩. ⟨hal-03054559⟩
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https://hal.science/hal-03054559/file/32983005_BIB_F4727BFFC750.pdf BibTex
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Bárbara Magalhães, Benoit Valot, Mohamed Abdelbary, Guy Prod'Hom, Gilbert Greub, et al.. Combining Standard Molecular Typing and Whole Genome Sequencing to Investigate Pseudomonas aeruginosa Epidemiology in Intensive Care Units. Frontiers in Public Health, 2020, 8, ⟨10.3389/fpubh.2020.00003⟩. ⟨hal-03531160⟩
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D. Martak, A. Meunier, M. Sauget, P. Cholley, M. Thouverez, et al.. Comparison of pulsed-field gel electrophoresis and whole-genome-sequencing-based typing confirms the accuracy of pulsed-field gel electrophoresis for the investigation of local Pseudomonas aeruginosa outbreaks. Journal of Hospital Infection, 2020, 105 (4), pp.643-647. ⟨10.1016/j.jhin.2020.06.013⟩. ⟨hal-03044091⟩
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https://hal.science/hal-03044091/file/S019567012030298X.pdf BibTex
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Daniel Martak, Charles Henriot, Marion Broussier, Charlotte Couchoud, Benoit Valot, et al.. High Prevalence of Human-Associated Escherichia coli in Wetlands Located in Eastern France. Frontiers in Microbiology, 2020, 11, pp.552566. ⟨10.3389/fmicb.2020.552566⟩. ⟨hal-03040847⟩
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https://hal.science/hal-03040847/file/daniel%202020.pdf BibTex
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Line Pepin-Puget, Farid El Garch, Xavier Bertrand, Benoit Valot, Didier Hocquet. Genome analysis of enterobacteriaceae with non-wild type susceptibility to third-generation cephalosporins recovered from diseased dogs and cats in Europe. Veterinary Microbiology, 2020, 242, pp.108601. ⟨10.1016/j.vetmic.2020.108601⟩. ⟨hal-02537485⟩
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https://hal.science/hal-02537485/file/S0378113519312180.pdf BibTex
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Steffi Rocchi, Gabriel Reboux, Emeline Scherer, Audrey Laboissière, Cécile Zaros, et al.. Indoor Microbiome: Quantification of Exposure and Association with Geographical Location, Meteorological Factors, and Land Use in France. Microorganisms, 2020, 8 (3), pp.341. ⟨10.3390/microorganisms8030341⟩. ⟨hal-02543250⟩
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https://hal.science/hal-02543250/file/microorganisms-08-00341-v2.pdf BibTex

2019

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Thomas Durand, Gwendal Cueff, Béatrice Godin, Benoît Valot, Gilles Clément, et al.. Combined Proteomic and Metabolomic Profiling of the Arabidopsis thaliana vps29 Mutant Reveals Pleiotropic Functions of the Retromer in Seed Development. International Journal of Molecular Sciences, 2019, 20 (2), pp.362. ⟨10.3390/ijms20020362⟩. ⟨hal-02401707⟩
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https://hal.science/hal-02401707/file/2019_Durand_Int_J_Mol_Sci_1.pdf BibTex
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Anaïs Potron, Jean-Baptiste Vuillemenot, Hélène Puja, Pauline Triponney, Maxime Bour, et al.. ISAba1-dependent overexpression of eptA in clinical strains of Acinetobacter baumannii resistant to colistin. Journal of Antimicrobial Chemotherapy, 2019, 74 (9), pp.2544-2550. ⟨10.1093/jac/dkz241⟩. ⟨hal-02438322⟩
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Gabriel Reboux, Benoit B. Valot, Steffi Rocchi, Emeline Scherer, Sandrine Roussel, et al.. Storage mite concentrations are underestimated compared to house dust mite concentrations. Experimental and Applied Acarology, 2019, 77 (4), pp.511-525. ⟨10.1007/s10493-019-00376-2⟩. ⟨hal-02307828⟩
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2018

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Alice Baraquin, Eric Hervouet, Carine Richou, Pierre Flori, Paul Peixoto, et al.. Circulating cell-free DNA in patients with alveolar echinococcosis. Molecular and Biochemical Parasitology, 2018, 222, pp.14 - 20. ⟨10.1016/j.molbiopara.2018.04.004⟩. ⟨hal-01863922⟩
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Anne-Pauline Bellanger, Ana Berceanu, Steffi Rocchi, Benoit Valot, Jean Fontan, et al.. Development of a quantitative PCR detecting Cunninghamella bertholletiae to help in diagnosing this rare and aggressive mucormycosis. Bone Marrow Transplantation, 2018, ⟨10.1038/s41409-018-0194-5⟩. ⟨hal-01791907⟩
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Alexis Durand, François Maillard, Vanessa Alvarez-Lopez, Sarah Guinchard, Coralie Bertheau, et al.. Bacterial diversity associated with poplar trees grown on a Hg-contaminated site: Community characterization and isolation of Hg-resistant plant growth-promoting bacteria. Science of the Total Environment, 2018, 622-623, pp.1165-1177. ⟨10.1016/j.scitotenv.2017.12.069⟩. ⟨hal-01662763⟩
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https://hal.science/hal-01662763/file/STOTEN-D-17-06881R1.pdf BibTex
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Stéphane Pfendler, Battle Karimi, Pierre-Alain Maron, Lisa Ciadamidaro, Benoit Valot, et al.. Biofilm biodiversity in French and Swiss show caves using the metabarcoding approach: First data. Science of the Total Environment, 2018, 615, pp.1207 - 1217. ⟨10.1016/j.scitotenv.2017.10.054⟩. ⟨hal-01618378⟩
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Steffi Rocchi, Manon Ponçot, Nadia Morin-Crini, Audrey Laboissière, Benoît Valot, et al.. Determination of azole fungal residues in soils and detection of Aspergillus fumigatus-resistant strains in market gardens of Eastern France. Environmental Science and Pollution Research, 2018, 25 (32), pp.32015-32023. ⟨10.1007/s11356-018-3177-6⟩. ⟨hal-01957023⟩
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D Treepong, D Kos, D Guyeux, D. Blanc, B. Bertrand, et al.. Global emergence of the widespread Pseudomonas aeruginosa ST235 clone. Clinical Microbiology and Infection, 2018, 24 (3), pp.258 - 266. ⟨10.1016/j.cmi.2017.06.018⟩. ⟨hal-01812638⟩
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Panisa Treepong, Christophe Guyeux, Alexandre Meunier, Charlotte Couchoud, Didier Hocquet, et al.. panISa: Ab initio detection of insertion sequences in bacterial genomes from short read sequence data. Bioinformatics, 2018, 34 (22), pp.3795-3800. ⟨10.1093/bioinformatics/bty479⟩. ⟨hal-02438015⟩
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Gérald Umhang, Frédéric Grenouillet, Vanessa Bastid, Selim M’rad, Benoit B. Valot, et al.. Investigating the genetic diversity of Echinococcus granulosus sensu stricto with new microsatellites. Parasitology Research, 2018, 117 (9), pp.2743-2755. ⟨10.1007/s00436-018-5963-y⟩. ⟨hal-02195671⟩
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2017

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Hélène Bouxom, Damien Fournier, Kévin Bouiller, Didier Hocquet, Xavier Bertrand, et al.. Association between Pseudomonas aeruginosa positive water samples and healthcare-associated cases: nine-year study at one university hospital. Journal of Hospital Infection, 2017, 96 (3), pp.238 - 243. ⟨10.1016/j.jhin.2016.12.007⟩. ⟨hal-01863884⟩
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Alexis Durand, François Maillard, Julie Foulon, Hyun S. Gweon, Benoit Valot, et al.. Environmental Metabarcoding Reveals Contrasting Belowground and Aboveground Fungal Communities from Poplar at a Hg Phytomanagement Site. Microbial ecology, 2017, 74, pp.795-809. ⟨10.1007/s00248-017-0984-0⟩. ⟨hal-01518636⟩
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https://hal.science/hal-01518636/file/Durand.pdf BibTex
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Marc M. Galland, Dongli He, Imen I. Lounifi, Erwann Arc, Gilles Clément, et al.. An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality. Frontiers in Plant Science, 2017, 8, pp.1984. ⟨10.3389/fpls.2017.01984⟩. ⟨hal-01645144⟩
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https://hal.science/hal-01645144/file/2017_Galland_Frontiers%20in%20Plant%20Science_1.pdf BibTex
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Olivier Langella, Benoît Valot, Thierry Balliau, Mélisande Blein-Nicolas, Ludovic Bonhomme, et al.. X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification. Journal of Proteome Research, 2017, 16 (2), pp.494-503. ⟨10.1021/acs.jproteome.6b00632⟩. ⟨hal-01484169⟩
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Marie Petitjean, Daniel Martak, Alicia Silvant, Xavier Bertrand, Benoit Valot, et al.. Genomic characterization of a local epidemic Pseudomonas aeruginosa reveals specific features of the widespread clone ST395. Microbial Genomics, 2017, 3 (10), ⟨10.1099/mgen.0.000129⟩. ⟨hal-01664243⟩
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https://hal.science/hal-01664243/file/v_7.1_Breakpoint_Tables.pdf BibTex
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Steffi Rocchi, Benoît Valot, Gabriel Reboux, Laurence Millon. DNA metabarcoding to assess indoor fungal communities: Electrostatic dust collectors and Illumina sequencing. Journal of Microbiological Methods, 2017, 139, pp.107 - 112. ⟨10.1016/j.mimet.2017.05.014⟩. ⟨hal-01664751⟩
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Adeline Rouzet, Gabriel Reboux, Jean-Charles Dalphin, Anne Gondouin, Paul de Vuyst, et al.. An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung. Journal of Immunological Methods, 2017, 450, pp.58 - 65. ⟨10.1016/j.jim.2017.07.012⟩. ⟨hal-01664277⟩
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Adeline Rouzet, Gabriel Reboux, Jean-Charles Dalphin, Paul de Vuyst, Audrey Laboissière, et al.. Usefulness of à la carte antigens for bird fancier’s lung serodiagnosis: total dropping extract and/or dropping’s microflora antigens. Journal of Medical Microbiology, 2017, 66 (10), pp.1467 - 1470. ⟨10.1099/jmm.0.000586⟩. ⟨hal-01667609⟩
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Marlène Sauget, Benoît Valot, Xavier Bertrand, Didier Hocquet. Can MALDI-TOF Mass Spectrometry Reasonably Type Bacteria?. Trends in Microbiology, 2017. ⟨hal-01505999⟩
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Benoit Valot, Bénédicte Rognon, Anais Prenel, Alice Baraquin, Jenny Knapp, et al.. Screening of antigenic vesicular fluid proteins of Echinococcus multilocularis as potential viability biomarkers to monitor drug response in alveolar echinococcosis patients. PROTEOMICS - Clinical Applications, 2017, ⟨10.1002/prca.201700010⟩. ⟨hal-01667558⟩
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Amélie Varin, Benoît Valot, Pascal Cholley, Camille Morel, Michelle Thouverez, et al.. High prevalence and moderate diversity of Pseudomonas aeruginosa in the U-bends of high-risk units in hospital. International Journal of Hygiene and Environmental Health, 2017, 220 (5), pp.880 - 885. ⟨10.1016/j.ijheh.2017.04.003⟩. ⟨hal-01664766⟩
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2016

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Anne-Pauline Bellanger, Houssein Gbaguidi-Haore, Anne Gondoin, Jean-Rene Pallandre, Mallory Vacheyrou, et al.. Positive fungal quantitative PCR and Th17 cytokine detection in bronchoalveolar lavage fluids: Complementary biomarkers of hypersensitivity pneumonitis?. Journal of Immunological Methods, 2016, 434, pp.61-5. ⟨hal-01368319⟩
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Julie Foulon, Cyril Zappelini, Alexis Durand, Benoit Valot, Olivier Girardclos, et al.. Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites. Science of the Total Environment, 2016, 571, pp.1230 - 1240. ⟨10.1016/j.scitotenv.2016.07.151⟩. ⟨hal-01512323⟩
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Julie Foulon, Cyril Zappelini, Alexis Durand, Benoit Valot, Damien Blaudez, et al.. Impact of poplar-based phytomanagement on soil properties and microbial communities in a metal-contaminated site. FEMS Microbiology Ecology, 2016, 92 (10), ⟨10.1093/femsec/fiw163⟩. ⟨hal-01512324⟩
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Didier Hocquet, Marie Petitjean, Laurence Rohmer, Benoît Valot, Hemantha D Kulasekara, et al.. Pyomelanin-producing Pseudomonas aeruginosa selected during chronic infections have a large chromosomal deletion which confers resistance to pyocins.. Environmental Microbiology, 2016, Ecophysiology of Pseudomonas, 18 (10), pp.3482-3493. ⟨10.1111/1462-2920.13336⟩. ⟨hal-01508741⟩
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https://hal.science/hal-01508741/file/nihms845262.pdf BibTex
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Laurence Millon, Benedicte Rognon, Benoit Valot, Coralie Barrera, Anne Pauline Bellanger, et al.. Common peptide epitopes induce cross-reactivity in hypersensitivity pneumonitis serodiagnosis.. Journal of Allergy and Clinical Immunology, 2016. ⟨hal-01368314⟩
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Steffi Rocchi, Maxime Tisserant, Benoit Valot, Audrey Laboissière, Victor Frossard, et al.. Quantification of Saprolegnia parasitica in river water using real-time quantitative PCR: from massive fish mortality to tap drinking water.. International Journal of Environmental Health Research, 2016, pp.1-10. ⟨hal-01397303⟩
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Bénédicte Rognon, Coralie Barrera, Michel Monod, Benoit Valot, Sandrine Roussel, et al.. Identification of Antigenic Proteins from Lichtheimia corymbifera for Farmer's Lung Disease Diagnosis.. PLoS ONE, 2016, 11 (8), pp.e0160888. ⟨10.1371/journal.pone.0160888⟩. ⟨hal-01368315⟩
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Emeline Scherer, Benoit Valot, Mallory Vacheyrou, Alexandre Naegele, Jenny Knapp, et al.. Assessment of pets (cats and dogs) in homes using electrostatic dust collectors and QPCR: new tools to evaluate exposure and risk of allergies.. International Journal of Environmental Health Research, 2016, 26 (5-6), pp.1-11. ⟨10.1080/09603123.2016.1217316⟩. ⟨hal-01368313⟩
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2015

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Melisande Blein-Nicolas, Warren Albertin, Telma da Silva, Benoît Valot, Thierry T. Balliau, et al.. A systems approach to elucidate heterosis of protein abundances in yeast. Molecular and Cellular Proteomics, 2015, 14 (8), pp.2056-2071. ⟨10.1074/mcp.M115.048058⟩. ⟨hal-02636704⟩
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https://hal.inrae.fr/hal-02636704/file/1-s2.0-S1535947620326608-main.pdf BibTex
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A Naegele, G Reboux, M Vacheyrou, B Valot, L Millon, et al.. Microbiological consequences of indoor composting.. Indoor Air, 2015. ⟨hal-01305451⟩
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Gabriel Reboux, Steffi Rocchi, Victor Frossard, Emeline Scherer, Benoit Valot, et al.. Caractérisation microbiologique de 3193 logements français des enfants de la cohorte ELFE. Journal of Medical Mycology = Journal de Mycologie Médicale, 2015, 25 (3), pp.228. ⟨10.1016/j.mycmed.2015.06.027⟩. ⟨hal-01211279⟩
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S. Rocchi, Gabriel Reboux, V. Frossard, E. Scherer, Benoit Valot, et al.. Microbiological characterization of 3193 French dwellings of Elfe cohort children. Science of the Total Environment, 2015, 505, pp.1026-1035. ⟨10.1016/j.scitotenv.2014.10.086⟩. ⟨hal-01117795⟩
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Benoît Valot, Jenny Knapp, Gérald Umhang, Frédéric Grenouillet, Laurence Millon. Genomic characterization of EmsB microsatellite loci in Echinococcus multilocularis.. Infection, Genetics and Evolution, 2015, 32, pp.338-41. ⟨10.1016/j.meegid.2015.03.040⟩. ⟨hal-01166207⟩
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Benoit Valot, Christophe Guyeux, Julien Yves Rolland, Kamel Mazouzi, Didier Hocquet, et al.. Detection of Temporal Clusters of Healthcare-Associated Infections or Colonizations with Pseudomonas aeruginosa in Two Hospitals: Comparison of SaTScan and WHONET Software Packages. PLoS ONE, 2015, 10 (10), pp.e0139920. ⟨10.1371/journal.pone.0139920⟩. ⟨hal-02552467⟩
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https://hal.science/hal-02552467/file/pone.0139920.pdf BibTex

2014

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Cosette C. Abdallah, Benoît Valot, Christelle Guillier, Arnaud Mounier, Thierry Balliau, et al.. The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis. Journal of Proteomics, 2014, 108, pp.354-368. ⟨10.1016/j.jprot.2014.05.028⟩. ⟨hal-02633346⟩
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Nardjis Amiour, Sandrine Imbaud, Gilles Clément, Nicolas Agier, Michel Zivy, et al.. An integrated “omics” approach to the characterization of maize (Zea mays L.) mutants deficient in the expression of two genes encoding cytosolic glutamine synthetase. BMC Genomics, 2014, 15 (1), pp.1005. ⟨10.1186/1471-2164-15-1005⟩. ⟨hal-01096990⟩
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https://hal.sorbonne-universite.fr/hal-01096990/file/Amiour_2014_An_integrated.pdf BibTex
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Thibault Chaze, Alain Guillot, Benoît Valot, Olivier Langella, Julia Chamot-Rooke, et al.. O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry.. Molecular and Cellular Proteomics, 2014, 13 (9), pp.2168-82. ⟨10.1074/mcp.M114.038075⟩. ⟨hal-01204448⟩
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https://hal.science/hal-01204448/file/Mol%20Cell%20Proteomics-2014-Chaze-2168-82.pdf BibTex
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Marlène Davanture, Jerome Dumur, Nelly Bataillé, Claire Campion, Benoit Valot, et al.. Phosphoproteome profiles of the phytopathogenic fungi [i]Alternaria brassicicola[/i] and [i]Botrytis cinerea[/i] during exponential growth in axenic cultures. Proteomics, 2014, 14 (13-14), pp.1639-1645. ⟨10.1002/pmic.201300541⟩. ⟨hal-04012727⟩
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https://hal.science/hal-04012727/file/Davanture_et_al_210314%20%281%29.pdf BibTex
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Marlène Davanture, Jerome Dumur, Nelly Bataillé, Claire Campion, Benoit Valot, et al.. Phosphoproteome profiles of the phytopathogenic fungi [i]Alternaria brassicicola[/i] and [i]Botrytis cinerea[/i] during exponential growth in axenic cultures. Proteomics, 2014, 14 (13-14), pp.1639-1645. ⟨10.1002/pmic.201300541⟩. ⟨hal-01209998⟩
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Catherine Juste, David P Kreil, Christian Beauvallet, Alain Guillot, Sebastian Vaca, et al.. Bacterial protein signals are associated with Crohn's disease.. Gut, 2014, 63 (10), pp.1566-1577. ⟨10.1136/gutjnl-2012-303786⟩. ⟨hal-00933734⟩
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https://hal.science/hal-00933734/file/2014_Juste_Gut_1.pdf BibTex
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Benoit Valot, Laurence Rohmer, Michael A Jacobs, Samuel I Miller, Xavier Bertrand, et al.. Comparative Genomic Analysis of Two Multidrug-Resistant Clinical Isolates of ST395 Epidemic Strain of Pseudomonas aeruginosa Obtained 12 Years Apart.. Genome Announcements, 2014, 2 (3), pp.00515-14. ⟨10.1128/genomeA.00515-14⟩. ⟨hal-01061619⟩
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https://hal.science/hal-01061619/file/e00515-14.pdf BibTex

2013

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Warren Albertin, Philippe Marullo, Marina Bely, Michel Aigle, Aurelie Bourgais, et al.. Linking post-translational modifications and variation of phenotypic traits. Molecular and Cellular Proteomics, 2013, 12 (3), pp.720 - 735. ⟨10.1074/mcp.M112.024349⟩. ⟨hal-01003318⟩
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Coralie Barrera, Benoît Valot, Bénédicte Rognon, Christophe Zaugg, Michel Monod, et al.. Draft Genome Sequence of the Principal Etiological Agent of Farmer's Lung Disease, Saccharopolyspora rectivirgula.. Genome Announcements, 2013, 2 (6), ⟨10.1128/genomeA.01340-14⟩. ⟨hal-01119476⟩
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Melisande Blein-Nicolas, Warren Albertin, Benoit B. Valot, Philippe Marullo, Delphine Sicard, et al.. Yeast proteome variations reveal different adaptive responses to grape must fermentation. Molecular Biology and Evolution, 2013, 30 (6), pp.1368-1383. ⟨10.1093/molbev/mst050⟩. ⟨hal-02648058⟩
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Sabine D’andrea, Pascale Jolivet, Francisca Acevedo, Céline Boulard, Sabine d'Andréa, et al.. Crop seed oil bodies: From challenges in protein identification to an emerging picture of the oil body proteome. Proteomics, 2013, 13 (12-13), pp.1836-1849. ⟨10.1002/pmic.201200431⟩. ⟨hal-03659038⟩
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Thibaut Douche, Hélène San Clemente, Vincent Burlat, David Roujol, Benoit B. Valot, et al.. Brachypodium distachyon as a model plant toward improved biofuel crops: search for secreted proteins involved in biogenesis and disassembly of cell wall polymers. Proteomics, 2013, 13 (16), pp.2438-2454. ⟨10.1002/pmic.201200507⟩. ⟨hal-02647765⟩
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Thomas Guérinier, Laurine Millan, Pierre Crozet, Celine Oury, Francois Rey, et al.. Phosphorylation of p27(KIP1) homologs KRP6 and 7 by SNF1-related protein kinase-1 links plant energy homeostasis and cell proliferation. Plant Journal, 2013, 75 (3), pp.515 - 525. ⟨10.1111/tpj.12218⟩. ⟨hal-02644290⟩
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Pascale Jolivet, Francisca Acevedo, Celine Boulard, Sabine d'Andrea, Jean Denis Faure, et al.. Crop seed oil bodies: from challenges in protein identification to an emerging picture of the oil body proteome. Proteomics, 2013, 13 (12-13), pp.1836-1849. ⟨10.1002/pmic.201200431⟩. ⟨hal-01204012⟩
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Olivier Langella, Benoit B. Valot, Daniel Jacob, Thierry T. Balliau, Raphaël-Gauthier Flores, et al.. Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction. Proteomics, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩. ⟨hal-02651260⟩
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Arafet Manaa, Mireille Faurobert, Benoit B. Valot, Jean-Paul Bouchet, Dominique Grasselly, et al.. Effect of salinity and calcium on tomato fruit proteome. OMICS, 2013, 17 (6), 15 p. ⟨10.1089/omi.2012.0108⟩. ⟨hal-02648418⟩
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Jiaxin Xu, Laura Pascual-Banuls, Rémy Aurand, Jean-Paul Bouchet, Benoit B. Valot, et al.. An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp. Proteomics, 2013, 13 (20), pp.3059 - 3063. ⟨10.1002/pmic.201200438⟩. ⟨hal-02653105⟩
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2012

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Francisca F. Acevedo, Monica M. Rubilar, Carolina C. Shene, Patricia P. Navarrete, Fernando F. Romero, et al.. Seed oil bodies from Gevuina avellana and Madia sativa. Journal of Agricultural and Food Chemistry, 2012, 60 (28), pp.6994-7004. ⟨10.1021/jf301390d⟩. ⟨hal-01000351⟩
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Nardjis N. Amiour, Sandrine S. Imbaud, Gilles G. Clément, Nicolas N. Agier, Michel M. Zivy, et al.. The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. Journal of Experimental Botany, 2012, 63 (14), pp.5017-5033. ⟨10.1093/jxb/ers186⟩. ⟨hal-01000350⟩
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Erwann Arc, Kamel Chibani, Philippe Grappin, Marc Jullien, Beatrice Godin-Pérénnez, et al.. Cold Stratification and Exogenous Nitrates Entail Similar Functional Proteome Adjustments during Arabidopsis Seed Dormancy Release. Journal of Proteome Research, 2012, 11 (11), pp.5418 - 5432. ⟨10.1021/pr3006815⟩. ⟨hal-01003345⟩
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Ludovic Bonhomme, Benoit B. Valot, Francois F. Tardieu, Michel M. Zivy. Phosphoproteome Dynamics Upon Changes in Plant Water Status Reveal Early Events Associated With Rapid Growth Adjustment in Maize Leaves. Molecular and Cellular Proteomics, 2012, 11 (10), pp.957-972. ⟨10.1074/mcp.M111.015867⟩. ⟨hal-02651323⟩
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Clémence Desjardin, Thierry Balliau, Benoit Valot, Michel Zivy, Laurence Wimel, et al.. A method for proteomic analysis of equine subchondral bone and epiphyseal cartilage. Proteomics, 2012, 12 (11), pp.1870-1874. ⟨10.1002/pmic.201100366⟩. ⟨hal-01019826⟩
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2011

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Willy V Bienvenut, Christelle Espagne, Aude Martinez, Wojetec Majeran, Benoît Valot, et al.. Dynamics of post-translational modifications and protein stability in the stroma of Chlamydomonas reinhardtii chloroplasts.. Proteomics, 2011, 11 (9), pp.1734-50. ⟨10.1002/pmic.201000634⟩. ⟨hal-00851379⟩
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Estelle Dumont, Nasser N. Bahrman, Estelle Goulas, Benoit B. Valot, Hélène Sellier-Richard, et al.. A proteomic approach to decipher chilling response from cold acclimation in pea (Pisum sativum L.). Plant Science, 2011, 180 (1), pp.86 - 98. ⟨10.1016/j.plantsci.2010.09.006⟩. ⟨hal-02649157⟩
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Pascale Jolivet, Celine Boulard, Annick Bellamy, Benoît Valot, Sabine d'Andrea, et al.. Oil body proteins sequentially accumulate throughout seed development in Brassica napus. Journal of Plant Physiology, 2011, 168 (17), pp.2015-2020. ⟨10.1016/j.jplph.2011.06.007⟩. ⟨hal-01189576⟩
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Laetitia Ligat, Emmanuelle Lauber, Cécile Albenne, Hélène San Clemente, Benoît Valot, et al.. Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins.. Proteomics, 2011, 11 (9), pp.1798-813. ⟨10.1002/pmic.201000781⟩. ⟨hal-00610601⟩
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Arafet Manaa, - Hela Ben Ahmed, Benoit B. Valot, Jean-Paul Bouchet, Samira Aschi-Smiti, et al.. Salt and genotype impact on plant physiology and root proteome variations in tomato. Journal of Experimental Botany, 2011, 62 (8), pp.2797-2813. ⟨10.1093/jxb/erq460⟩. ⟨hal-02646770⟩
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Benoit Valot, Olivier Langella, Edlira Nano, Michel Zivy. MassChroQ: A versatile tool for mass spectrometry quantification. Proteomics, 2011, 11 (17), pp.3572 - 3577. ⟨10.1002/pmic.201100120⟩. ⟨hal-01481216⟩
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Laëtitia Virlouvet, Marie Pierre Jacquemot, Denise Gerentes, Helene Corti, Sophie Bouton, et al.. The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions. Plant Physiology, 2011, 157 (2), pp.917-936. ⟨10.1104/pp.111.176818⟩. ⟨hal-02647863⟩
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Yu Zhang, Aurélie Giboulot, Michel Zivy, Benoît Valot, Elisabeth Jamet, et al.. Combining various strategies to increase the coverage of the plant cell wall glycoproteome.. Phytochemistry, 2011, 72 (10), pp.1109-23. ⟨10.1016/j.phytochem.2010.10.019⟩. ⟨hal-00610579⟩
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2010

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Zeina Daher, Ghislaine G. Recorbet, Benoit B. Valot, Franck F. Robert, Thierry T. Balliau. Proteomic analysis of Medicago truncatula root plastids. Proteomics, 2010, 10 (11), pp.2123-2137. ⟨10.1002/pmic.200900345⟩. ⟨hal-02657703⟩
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David Page, Barbara Gouble, Benoit B. Valot, Jean-Paul Bouchet, Caroline Callot, et al.. Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage. Planta, 2010, 232 (2), pp.483-500. ⟨10.1007/s00425-010-1184-z⟩. ⟨hal-02662653⟩
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Ghislaine G. Recorbet, Benoit B. Valot, Franck F. Robert, Vivienne V. Gianinazzi-Pearson, Eliane E. Dumas-Gaudot. Identification of in planta-expressed arbuscular mycorrhizal fungal proteins upon comparison of the root proteomes of Medicago truncatula colonised with two Glomus species. Fungal Genetics and Biology, 2010, 47 (7), pp.608-618. ⟨10.1016/j.fgb.2010.03.003⟩. ⟨hal-02664836⟩
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Caroline Sirichandra, Marlène M. Davanture, Benjamin E. Turk, Michel M. Zivy, Benoit B. Valot, et al.. The Arabidopsis ABA-Activated Kinase OST1 Phosphorylates the bZIP Transcription Factor ABF3 and Creates a 14-3-3 Binding Site Involved in Its Turnover. PLoS ONE, 2010, 5 (11), ⟨10.1371/journal.pone.0013935⟩. ⟨hal-02668895⟩
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2009

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Achref A. Aloui, Ghislaine G. Recorbet, Armelle Gollotte, Franck F. Robert, Benoit B. Valot, et al.. On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: A root proteomic study. Proteomics, 2009, 9 (2), pp.420-433. ⟨10.1002/pmic.200800336⟩. ⟨hal-02665088⟩
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Frédéric Frottin, Christelle Espagne, José A Traverso, Caroline Mauve, Benoît Valot, et al.. Cotranslational proteolysis dominates glutathione homeostasis to support proper growth and development.. The Plant cell, 2009, 21 (10), pp.3296-314. ⟨10.1105/tpc.109.069757⟩. ⟨hal-00853794⟩
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2008

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Aude Martinez, José A Traverso, Benoît Valot, Myriam Ferro, Christelle Espagne, et al.. Extent of N-terminal modifications in cytosolic proteins from eukaryotes.. Proteomics, 2008, 8 (14), pp.2809-31. ⟨10.1002/pmic.200701191⟩. ⟨hal-00853807⟩
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2007

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Christelle Espagne, Aude Martinez, Benoît Valot, Thierry Meinnel, Carmela Giglione. Alternative and effective proteomic analysis in Arabidopsis.. Proteomics, 2007, 7 (20), pp.3788-99. ⟨10.1002/pmic.200700346⟩. ⟨hal-00187943⟩
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2006

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Antoine Martin, Judy Lee, Thomas Kichey, Denise Gerentes, Michel Zivy, et al.. Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production.. The Plant cell, 2006, 18 (11), pp.3252-74. ⟨10.1105/tpc.106.042689⟩. ⟨hal-01927336⟩
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2004

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Eliane Dumas-Gaudot, Benoît Valot, G. Bestel-Corre, Ghislaine Recorbet, M. St-Arnaud, et al.. Proteomics as a way to identify extra-radicular fungal proteins from Glomus intraradices - RiT-DNA carrot root mycorrhizas. FEMS Microbiology Ecology, 2004, 48, pp.401-411. ⟨hal-02671977⟩
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Eliane Dumas-Gaudot, Nardjis Amiour, Stephanie Weidmann, G. Bestel-Corre, Benoît Valot, et al.. A technical trick for studying proteomics in parallel to transcriptomics in symbiotic root-fungus interactions. Proteomics, 2004, 4, pp.451-453. ⟨hal-02675283⟩
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Benoît Valot, Silvio Gianinazzi, Eliane Dumas-Gaudot. Sub-cellular proteomic analysis of a Medicago truncatula root microsomal fraction. Phytochemistry, 2004, 65, pp.1721-1732. ⟨hal-02671433⟩
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Conference papers

2018

ref_biblio
Caroline Schaal, Jehanne Oudot-Canaff, Quentin Cuenot, Carole Bégeot, Benoit Valot, et al.. Reconstruction de la végétation actuelle et passée d’un méandre du Doubs à l’aide de marqueurs carpologiques, palynologiques et génétiques. 13èmes rencontres d'archeobotanique, Feb 2018, Station biologique de Besse (Auvergne), France. ⟨hal-02372696⟩
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2017

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Damien Blaudez, Lisa Ciadamidaro, Julie Foulon, Cyril Zappelini, Alexis Durand, et al.. Large-scale demonstration of increased production of poplar biomass by mycorrhizal inoculation at metal-contaminated phytomanagement sites, and investigation of associated fungal communities. 9th International Conference on Mycorrhiza, Jul 2017, Prague, Czech Republic. ⟨hal-03189719⟩
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Michel Chalot, Olivier Girardclos, Loïc Yung, Cyril Zappelini, Benoit B. Valot, et al.. Biomass, mineralomass and microbial communities at poplar phytomanagement sites: a ten-year study. 14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland. ⟨hal-03189722⟩
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Michel Chalot, Julie Foulon, Cyril Zappelini, Alexis Durand, Benoit B. Valot, et al.. Environmental metabarcoding as a relevant tool to reveal structure and composition of microbial communities at phytomanagement sites. 14th International Conference on Sustainable Use and Management of Soil, Sediment and Water Resources (AQUACONSOIL), Jun 2017, Lyon, France. ⟨hal-03189726⟩
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A. Durand, François Maillard, Benoit Valot, Hyun S. Gweon, Michel Chalot. Microbial communities from poplar at a Hg phytomanagement site. 14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland. ⟨hal-03528780⟩
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Julie Foulon, Cyril Zappelini, Alexis Durand, Benoit Valot, Mathieu Luglia, et al.. Environmental metabarcoding as a tool to reveal structure and composition of microbial communities in anthropogenic soils. 4ème colloque de Génomique Environnementale, Sep 2017, Marseille, France. ⟨hal-01766402⟩
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Cyril Zappelini, Mohamad Assad, Nicolas Capelli, Fabienne Tatin-Froux, Julien Parelle, et al.. Natural recolonization of tailings dumps by trees and microbes: a case study. 14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland. ⟨hal-03189725⟩
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2016

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Jenny Knapp, Umhang Gérald, Benoit Valot, Francis Raoul, Sylvie Damy, et al.. Methods in genetics to investigate E. multilocularis transmission patterns. Research and methods in ecohealth and conservation, GDRI Ecosystem Health and Environmental Disease Ecology, Nov 2016, Kunming, China. ⟨hal-01367365⟩
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Francis Raoul, Antoine Perasso, Virgile Baudrot, Benoit Valot, Eve Afonso, et al.. New approaches to description and modeling of trophic interactions: reliable allies to study trophically-transmitted parasites?. Research and methods in ecohealth and conservation, GDRI Ecosystem Health and Environmental Disease Ecology, Nov 2016, Kunming, China. ⟨hal-01367367⟩
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2012

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Cosette C. Abdallah, Jenny Renaut, Benoît Valot, Michel Zivy, Ghislaine Recorbet, et al.. Protéome membranaire en réponse à la symbiose mycorhizienne à arbuscules par GeLC-MS/MS. 3. Journées Francophones Mycorhizes, Sep 2012, Nancy, France. ⟨hal-02750064⟩
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Cosette C. Abdallah, Jenny Renaut, Benoît Valot, Michel Zivy, Ghislaine Recorbet, et al.. Label-free 1-DE-LC-MS/MS to identify arbuscular mycorrhiza related membrane proteins. 3. Annual Joint Meeting on Plant Microbe Interactions, Conseil Régional de Bourgogne. FRA., Sep 2012, Dijon, France. 13 p. ⟨hal-02744745⟩
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Jérôme Dumur, Marlène M. Davanture, Benoît Valot, Claire Campion, Nelly Bataille-Simoneau, et al.. Analyse phosphoprotéomique des voies de réponse au fludioxonil des champignons filamenteux Alternaria brassicicola et Botrytis cinerea. Journées des Microbiologistes de l'INRA, 2012, L'Isle sur la Sorgue, France. ⟨hal-03281861⟩
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2011

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Cosette Abdallah, Eliane Dumas Gaudot, Christelle Guillier, Ghislaine G. Recorbet, Daniel D. Wipf, et al.. Label-free 1-DE-LC-MS/MS and iTRAQ-OFFGEL-LC-MS/MS to identify arbuscular mycorrhiza-related membrane proteins.. Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France. ⟨hal-03746442⟩
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Warren Albertin, Philippe Marullo, Michel Aigle, Aurélie Bourgais, Olivier Langella, et al.. Fermentation rate, population size, CO2 flux and quantitative proteomics: a multi-level approach applied to alcoholic fermentation in Saccharomyces cerevisiae. Oeno 2011. 9è Symposium International d'Oenologie de Bordeaux, Jun 2011, Bordeaux, France. 1186 p. ⟨hal-01204311⟩
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Marlène M. Davanture, Benoit B. Valot, Michel M. Zivy, Sabine, Helma S. H. Fillinger-David. Phosphoproteomics to trace signal transduction. BSPGW 2011 : Botrytis -Sclerotinia Post-Genome Workshop, Sep 2011, Lyon, France. pp.10. ⟨hal-01000564⟩
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Marlène M. Davanture, Benoit B. Valot, Claire C. Campion, Jerome J. Dumur, Nelly N. Bataillé, et al.. The fluioxonil induced phosphoproteomes of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea. 26. Fungal Genetics Conference at Silomar, Mar 2011, Asilomar, United States. pp.110. ⟨hal-01000456⟩
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Marlène M. Davanture, Benoît Valot, Claire Campion, Jérôme Dumur, Nelly Bataille-Simoneau, et al.. The fludioxonil induced phosphoproteomes of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea. 26th Fungal Genetics Conference, 2011, Asilomar, États-Unis. ⟨hal-03281864⟩
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2010

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Renaud Flores, Johann J. Joets, Olivier Langella, Benoit B. Valot, Michel M. Zivy, et al.. PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration. Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France. ⟨hal-02758409⟩
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https://hal.inrae.fr/hal-02758409/file/Faurobert%202010%20Genoplante%2072-73_1.pdf BibTex

2009

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Zeina Daher, Ghislaine Recorbet, Achref Aloui, Benoit Valot, Thierry Balliau, et al.. Subcellular proteomics sheds light on root plastid involvement in Medicago truncatula arbuscular mycorrhizal symbiosis. Congrès SMAP (Spectrométrie de masse et analyse protéomique), Sep 2009, Dijon, France. ⟨hal-03746862⟩
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2008

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Eliane Dumas-Gaudot, Ghislaine Recorbet, Franck Robert, Nardjis Amiour, Pierre Offre, et al.. Proteomes of arbuscular mycorrhizal symbiosis : past and present achievements. Proteomlux 2008 : Proteomics in Plants, Microorganisms and Environment, 2008, Luxembourg, Luxembourg. ⟨hal-03746917⟩
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Eliane E. Dumas-Gaudot, Achref A. Aloui, Franck F. Robert, Benoit B. Valot, Celine C. Henry, et al.. The arbuscular mycorrhizal symbiosis a modulator of cadmium stress. II WG 2 MEETING "Will plant proteomics research help in facing food, health and environmental concern?, Feb 2008, Cordoba, Spain. ⟨hal-02752183⟩
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David Page, Barbara Gouble, Caroline Callot, Andre Kretzschmar, Benoit B. Valot, et al.. Proteomics to characterize the effect of a tomato genomic region on the fruit sensitivity to cold storage. Proteomlux 2008, Proteomics in plants, microorganisms and environment, Oct 2008, Luxembourg, Luxembourg. ⟨hal-02756755⟩
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2007

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Zeina Daher, Thomas Fester, Benoit B. Valot, Dominique Morandi, Benoît Schoefs, et al.. Could subcellular proteomics of root plastids teach us more about mycorrhizal symbiosis?. XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy. ⟨hal-02754543⟩
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Benoit B. Valot, Franck F. Robert, Nardjis N. Amiour, Ghislaine G. Recorbet, Eliane E. Dumas-Gaudot. Contribution of proteomics to arbuscular mycorrhiza in Medicago truncatula. Model Legumes Congress (MLC2007), Mar 2007, Tunis, Tunisia. ⟨hal-02756740⟩
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Benoit B. Valot, Nardjis N. Amiour, Zeina Daher, Franck F. Robert, Ghislaine G. Recorbet, et al.. Arbuscular mycorhizal proteomes: what news at the nearby and distant horizon?. XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy. ⟨hal-02753337⟩
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2006

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Ghislaine Recorbet, Nardjis Amiour, Benoit Valot, Gwenaelle Bestel-Corre, Franck Robert, et al.. Protein profiling analyses in arbuscular mycorrhizal symbiosis. 5th International Conference on Mycorrhiza (ICOM5), Jul 2006, Granada, Spain. ⟨hal-03746947⟩
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2005

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Benoit Valot, Marc Dieu, Luc Negroni, Ghislaine Recorbet, Martine Raes, et al.. Membrane proteomic analyses to reveal and identify arbuscular mycorrhizal-related proteins. COST Action 8.38 Management Committee and Final meeting on "Achievement and Future Landscape for Arbuscular Mycorrhiza Research, Jun 2005, Dijon, France. ⟨hal-03747131⟩
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Benoit Valot, Marc Dieu, Luc Negroni, Ghislaine Recorbet, Martine Raes, et al.. Membrane proteomic of arbuscular mycorrhiza. HUPO Congress, Aug 2005, Munich, Germany. ⟨hal-03747132⟩
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2004

ref_biblio
Eliane Dumas-Gaudot, Benoit Valot, Ghislaine Recorbet, Nardjis Amiour, Gwenaelle Bestel-Corre, et al.. Proteomics: a functional genomic approach for studying mycorrhizal interactions in legumes. Fifth European Conference on Grain Legumes - Legumes for the benefit of agriculture nutrition and the environment: their genomics, their products, and their improvement, Jun 2004, Dijon, France. ⟨hal-03747144⟩
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Book sections

2008

ref_biblio
Ghislaine G. Recorbet, Benoit Valot, Eliane Dumas Gaudot. Plasma membrane in arbuscular mycorrhiza. Benoît Schoefs. Plant Cell Compartments - Selected Topics, Research Signpost, 2008, ISBN 978-81-308-0104-9. ⟨hal-03745603⟩
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2006

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Satish Nagaraj, Zhentian Lei, Bonnie Watson, Lloyd Sumner, Karine Gallardo, et al.. Proteomics of different tissues. Medicago truncatula handbook, The Samuel Roberts Noble Foundation, 2006, 0-9754303-1-9. ⟨hal-02820000⟩
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Poster communications

2022

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Agnese Lupo, Benoit Valot, Antoine Drapeau, Estelle Saras, Bour Maxime, et al.. Phylogenetic and resistome analysis of epidemic multidrug-resistant Acinetobacter baumannii clone. FEMS Conference on Microbiology, Jun 2022, Belgrade, Serbia. ⟨anses-04542385⟩
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2021

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Susie Gaillot, Catherine Llanes, Benoit Valot, Salomé Kiener, Patrick Plesiat. Intra-patient evolution of a pulmonary strain of Pseudomonas aeruginosa from primo-colonisation to lung transplant. European Young Investigators Meeting (EYIM). 44th European Cystic Fibrosis Society (ECFS) Conferences, Dec 2021, Digital, France. ⟨hal-03527024⟩
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2019

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Alexandre Tetard, Susie Gaillot, Benoit Valot, Patrick Plésiat, Catherine Llanes. Association antibiotique – extraits d’huiles essentielles : effets antagonistes chez Pseudomonas aeruginosa. 15ème congrès national de la Société Française de Microbiologie, Oct 2019, Paris, France. ⟨hal-03527394⟩
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2017

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Damien Blaudez, Julie Foulon, Cyril Zappelini, Alexis Durand, Lisa Ciadamidaro, et al.. Large-scale plantations of poplar at metal-contaminated phytomanagement sites: investigation of associated fungal communities. 9th International Conference on Mycorrhiza, Jul 2017, Prague, Czech Republic. ⟨hal-03189704⟩
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2014

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Christine Arnould, Sally Koegel, Lucie Geay, Michael Kälin, Benoît Valot, et al.. La microdissection laser : une technique d’analyse du profil d’expression génique et protéique des types cellulaires spécifiques de la symbiose mycorhizienne à arbuscules. 5. Journées Scientifiques et Techniques du Réseau des Microscopistes INRA, Nov 2014, Dijon, France. 2014. ⟨hal-02741805⟩
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2013

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Laura Pascual, Jiaxin Xu, Nelly Desplat, Benoit B. Valot, Jean-Paul Bouchet, et al.. Exploring genetic diversity in tomato fruit with a systems biology approach. 21. International Plant and Animal Genome, Jan 2013, San Diego, United States. 2013. ⟨hal-02745690⟩
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2012

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Cosette C. Abdallah, Jenny Renaut, Benoît Valot, Michel Zivy, Ghislaine Recorbet, et al.. Label-free 1-DE-LC-MS/MS to identify arbuscular mycorrhiza-related membrane proteins. 3. Annual Joint Meeting on Plant Microbe Interactions, Sep 2012, Dijon, France. , 15 p., 2012, Abstract of the third annual joint meetong on plant microbe interactions. ⟨hal-02747762⟩
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2011

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Achref Aloui, Christelle Guillier, Ghislaine G. Recorbet, Benoit Valot, Daniel Wipf, et al.. A Medicago truncatula root plasma membrane enriched fraction as a prerequisite for label free quantitative analysis of plasmalemma protein changes upon arbuscular mycorrhizal symbiosis. Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France. ⟨hal-03746502⟩
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Zeina Daher, Ghislaine G. Recorbet, Thierry Balliau, Benoit Valot, Michel Zivy, et al.. Mycorrhization-induced changes in the root plastid proteome of Medicago truncatula. Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France. ⟨hal-03746485⟩
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Edlira Nano, Benoit Valot, Olivier Langella, Ludovic Bonhomme, Mélisande Blein, et al.. MassChroQ : A versatile tool for mass spectrometry quantification. Final COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France. ⟨hal-03663220⟩
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2010

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Cosette Abdallah, Eliane Dumas Gaudot, Ghislaine Recorbet, Christelle Guillier, Daniel Wipf, et al.. Technical improvements for analysis of récalcitrant proteins by LC-MS. ProteomLux 2010. "International Conference on Proteomics in Plants, Microorganisms and Environment, Oct 2010, Luxembourg, Luxembourg. ⟨hal-03746595⟩
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Cosette Abdallah, Christelle Guillier, Ghislaine Recorbet, Eliane Dumas-Gaudot, Daniel Wipf, et al.. Vers l'étude quantitative et fonctionnelle des protéomes membranaires des racines mis en jeu au cours de la symbiose mycorhizienne à arbuscules de Medicago truncatula. 2ièmes Journées Francophones Mycorhizes, Sep 2010, Bruxelles, Belgique. ⟨hal-03746586⟩
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Christelle Guillier, Cosette Abdallah, Philippe Hammann, Benoit Valot, Jenny Renaut, et al.. Functional analysis of the membrane proteome of Medicago truncatula roots upon colonization by the arbuscular mycorrhizal fungus Glomus irregulare. ProteomLux 2010. "International Conference on Proteomics in Plants, Microorganisms and Environment", Oct 2010, Luxembourg, Luxembourg. ⟨hal-03746655⟩
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2009

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Christelle C. Cebo, C. Henry, Christelle Lopez, Benoît Valot, M. Zivy, et al.. Label-free quantitation of proteins involved in milk fat globule secretion from the mammary epithelial cell.. Congrès Spectrométrie de Masse & Analyse Protéomique SMAP, Sep 2009, Dijon, pp.Inconnu, 2009. ⟨hal-02815016⟩
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Zeina Daher, Ghislaine G. Recorbet, Franck Robert, Benoit Valot, Thierry Balliau, et al.. Cellular and subcellular studies of the arbuscular mycorrhizal symbiosis in M. truncatula: a proteomic survey. 6th International Conference on Mycorrhiza (ICOM6), Aug 2009, Belo Horizonte, Brazil. ⟨hal-03746877⟩
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Eliane Dumas-Gaudot, Ghislaine Recorbet, Franck Robert, Nardjis Amiour, Pierre Offre, et al.. Studying the arbuscular mycorrhizal symbiosis from axenic system to soilborne interactions by proteomics: which challenges to face?. Congrès SMAP (Spectrométrie de masse et analyse protéomique), Sep 2009, Dijon, France. ⟨hal-03746880⟩
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2006

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Benoit Valot, Odile Thiery, Achref Aloui, Ghislaine Recorbet, Marc Dieu, et al.. Membrane proteomics of arbuscular mycorrhiza. Mycorrhiza for science and society-5th International Conference on Mycorrhiza (ICOM5), Jul 2006, Granada, Spain. ⟨hal-03746943⟩
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2004

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Eliane Dumas-Gaudot, Benoit Valot, Ghislaine Recorbet, Nardjis Amiour, Gwenaelle Bestel-Corre. Plant mycorrhizal interaction: What can we learn from a proteomic approach?. COST Action 8.49 "Parasitic Plant Management in sustainable Agriculture", Oct 2004, Wageningen, Netherlands. ⟨hal-03747148⟩
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