Journal articles

2023

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Christian At, Daniel Gilbert, Lionel Thomas. Optimal policy for organic farming conversion. Revue d'économie politique, 2023, 133 (1), pp.105-118. ⟨hal-04526583⟩

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Lise Pinault, Malo Pilloix, Grégory Bernard, Daniel Joly, Sébastien Gogo, et al.. The 1949 Atlas of French peat deposits, a starting point for a National Inventory of peatlands. Soil Use and Management, 2023, 39 (3), pp.1040-1056. ⟨10.1111/sum.12919⟩. ⟨hal-04192260⟩

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2021

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Guillaume Bertrand, Alex Ponçot, Benjamin Pohl, Alexandre Lhosmot, Marc Steinmann, et al.. Statistical hydrology for evaluating peatland water table sensitivity to simple environmental variables and climate changes application to the mid-latitude/altitude Frasne peatland (Jura Mountains, France). Science of the Total Environment, 2021, 754, 141931 (55 p.). ⟨10.1016/j.scitotenv.2020.141931⟩. ⟨insu-02921354⟩

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Daniel Joly, Daniel Gilbert, Maria Diaz-De-Quijano, Mohamed Hilal, Mathieu Joly, et al.. Enhancing air quality forecasts by geomatic downscaling: an application to daily PM10 concentrations in France. Theoretical and Applied Climatology, 2021, 143 (1), pp.327-339 (2021). ⟨10.1007/s00704-020-03418-7⟩. ⟨hal-02973090⟩

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2019

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Vincent Bretagnolle, Marc Benoît, Mathieu Bonnefond, Vincent Breton, Jon Church, et al.. Action-orientated research and framework: insights from the French long-term social-ecological research network. Ecology and Society, 2019, 24 (3), pp.10. ⟨10.5751/ES-10989-240310⟩. ⟨hal-02413687⟩

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Emilie Gauthier, Vincent Jassey, Edward A.D. Mitchell, Mariusz Lamentowicz, Richard Payne, et al.. From Climatic to Anthropogenic Drivers: A Multi-Proxy Reconstruction of Vegetation and Peatland Development in the French Jura Mountains. Quaternary, 2019, 2 (4), 13 p. ⟨10.3390/quat2040038⟩. ⟨insu-02415346⟩

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2018

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Jérôme Gaillardet, Isabelle Braud, Fatim Hankard, Sandrine Anquetin, Olivier Bour, et al.. OZCAR : The French Network of Critical Zone Observatories. Vadose Zone Journal, 2018, 17 (1), pp.1-24. ⟨10.2136/vzj2018.04.0067⟩. ⟨insu-01944414⟩

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Christian Mougin, Véronique Gouy, Vincent Bretagnolle, Julie Berthou, Patrick Andrieux, et al.. RECOTOX, a French initiative in ecotoxicology-toxicology to monitor, understand and mitigate the ecotoxicological impacts of pollutants in socioagroecosystems. Environmental Science and Pollution Research, 2018, 25 (34), ⟨10.1007/s11356-018-2716-5⟩. ⟨hal-01846379⟩

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2017

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Maxence Delaine, Nadine Bernard, Daniel Gilbert, Philippe Recourt, Eric Armynot Du Châtelet. Origin and diversity of testate amoebae shell composition: Example of Bullinularia indica living in Sphagnum capillifolium. European Journal of Protistology, 2017, 59, pp.14 - 25. ⟨10.1016/j.ejop.2017.03.002⟩. ⟨hal-01516979⟩

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Daniel Gilbert, Richard Payne, Sylvia Toet, Mike Ashmore, Vincent Jassey. Impacts of tropospheric ozone exposure on peatland microbial consumers. Soil Biology and Biochemistry, 2017, 115, pp.124 - 128. ⟨10.1016/j.soilbio.2017.08.012⟩. ⟨hal-01660079⟩

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Battle Karimi, Pierre-Alain Maron, Nicolas Chemidlin Prévost-Bouré, Nadine Bernard, Daniel Gilbert, et al.. Microbial diversity and ecological networks as indicators of environmental quality. Environmental Chemistry Letters, 2017, 15 (2), pp.265-281. ⟨10.1007/s10311-017-0614-6⟩. ⟨hal-01516976⟩

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2016

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Maria Diaz-De-Quijano, Daniel Joly, Daniel Gilbert, Marie-Laure Toussaint, Marielle Franchi, et al.. Modelling and mapping trace element accumulation in Sphagnum peatlands at the European scale using a geomatic model of pollutant emissions dispersion. Environmental Pollution, 2016, 214, pp.8-16. ⟨10.1016/j.envpol.2016.03.036⟩. ⟨hal-01313641⟩

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Battle Karimi, Caroline Meyer, Daniel Gilbert, Nadine Bernard. Air pollution below WHO levels decreases by 40 % the links of terrestrial microbial networks. Environmental Chemistry Letters, 2016, 14 (4), pp.467 - 475. ⟨10.1007/s10311-016-0589-8⟩. ⟨hal-01516963⟩

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Richard J. Payne, Kirill V. Babeshko, Simon van Bellen, Jeffrey J. Blackford, Robert K. Booth, et al.. Significance testing testate amoeba water table reconstructions. Quaternary Science Reviews, 2016, 138, pp.131 - 135. ⟨10.1016/j.quascirev.2016.01.030⟩. ⟨hal-01516970⟩

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L Song, Daniel Gilbert, D Wu. Vertical micro-distribution of microbial communities living in Sphagnum fallax. Aquatic Microbial Ecology, 2016, 77 (1), pp.1 - 10. ⟨10.3354/ame01783⟩. ⟨hal-01516967⟩

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2015

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Eric Armynot Du Chatelet, Nadine Bernard, Maxence Delaine, Jean-Luc Potdevin, Daniel Gilbert. The mineral composition of the tests of 'testate amoebae' (Amoebozoa, Arcellinida): the relative importance of grain availability and grain selection. Revue de Micropaléontologie, 2015, 58, pp.141-154. ⟨10.1016/j.revmic.2015.05.001⟩. ⟨hal-01272243⟩

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Vincent E.J. Jassey, Constant Signarbieux, Stephan Hättenschwiler, Luca Bragazza, Alexandre Buttler, et al.. An unexpected role for mixotrophs in the response of peatland carbon cycling to climate warming. Scientific Reports, 2015, 5 (Article number: 16931), pp.1-10. ⟨10.1038/srep16931⟩. ⟨insu-01240013⟩

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Mariusz Lamentowicz, Michał Słowiński, Katarzyna Marcisz, Małgorzata Zielińska, Karolina Kaliszan, et al.. Hydrological dynamics and fire history of the last 1300years in western Siberia reconstructed from a high-resolution, ombrotrophic peat archive. Quaternary Research, 2015, 84, pp.312-325. ⟨10.1016/j.yqres.2015.09.002⟩. ⟨insu-01240109⟩

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Cyril Zappelini, Battle Karimi, Julie Foulon, Laurence Didier Lacercat-Didier, Francois Maillard, et al.. Diversity and complexity of microbial communities from a chlor-alkali tailings dump. Soil Biology and Biochemistry, 2015, 90, pp.101-110. ⟨10.1016/j.soilbio.2015.08.008⟩. ⟨hal-02372435⟩

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2014

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Maria Diaz-De-Quijano, Daniel Joly, Daniel Gilbert, Nadine Bernard. A more cost-effective geomatic approach to modelling PM10 dispersion across Europe. Applied Geography, 2014, 55, pp.108-116. ⟨10.1016/j.apgeog.2014.09.002⟩. ⟨hal-01069750⟩

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2013

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Dorine Desalme, Jc Roy, Philippe Binet, Genevieve Chiapusio, Daniel Gilbert, et al.. Exposure Chambers for Studying the Partitioning of Atmospheric PAHs in Environmental Compartments: Validation and Calibration Using Experimental and Computational Approaches. Environmental Science and Technology, 2013, 47 (15), pp.8399-8407. ⟨10.1021/es4016266⟩. ⟨hal-01061489⟩

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Vincent P Jassey, Caroline Meyer, Christine Dupuy, Nadine Bernard, Edward Ad Mitchell, et al.. To What Extent Do Food Preferences Explain the Trophic Position of Heterotrophic and Mixotrophic Microbial Consumers in a Sphagnum Peatland?. Microbial ecology, 2013, 66 (3), pp.571 - 580. ⟨10.1007/s00248-013-0262-8⟩. ⟨hal-01420339⟩

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Vincent Jassey, Geneviève Chiapuso, Philippe Binet, Alexandre Buttler, Fatima Laggoun-Défarge, et al.. Above- and belowground linkages in Sphagnum peatland: climate warming affects plant-microbial interactions. Global Change Biology, 2013, 19 (3), pp.811-823. ⟨10.1111/gcb.12075⟩. ⟨insu-00766326⟩

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Caroline Meyer, Dorine Desalme, Nadine Bernard, Philippe Binet, Marie-Laure Toussaint, et al.. Using testate amoeba as potential biointegrators of atmospheric deposition of phenanthrene (polycyclic aromatic hydrocarbon) on "moss/soil interface-testate amoeba community" microecosystems. Ecotoxicology, 2013, 22 (2), pp 287-294. ⟨hal-01061490⟩

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Richard Payne, Vincent E. J. Jassey, Ian Leith, Lucy Sheppard, Nancy B. Dise, et al.. Ammonia exposure promotes algal biomass in an ombrotrophic peatland. Soil Biology and Biochemistry, 2013, 57, pp.937-938. ⟨10.1016/j.soilbio.2012.09.012⟩. ⟨hal-00820346⟩

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2012

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Dorine Desalme, Genevieve Chiapusio, Nadine Bernard, Daniel Gilbert, Marie-Laure Toussaint, et al.. Arbuscular Mycorrhizal Fungal Infectivity in Two Soils as Affected by Atmospheric Phenanthrene Pollution. Water, Air, and Soil Pollution, 2012, 223 (6), pp.3295 - 3305. ⟨hal-00707063⟩

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Vincent E. J. Jassey, Geneviève Chiapusio, Daniel Gilbert, Marie-Laure Toussaint, Philippe Binet. Phenoloxidase and peroxidase activities in Sphagnum-dominated peatland in a warming climate. Soil Biology and Biochemistry, 2012, 46, pp.49-52. ⟨hal-00682547⟩

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Vincent E. J. Jassey, Shimano Satoshi, Christine Dupuy, Marie-Laure Toussaint, Daniel Gilbert. Characterizing the Feeding Habits of the Testate Amoebae Hyalosphenia papilio and Nebela tincta along a Narrow "Fen-Bog" Gradient Using Digestive Vacuole Content and (13)C and (15)N Isotopic Analyses.. Protist, 2012, 163, pp.451-464. ⟨hal-00682531⟩

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Caroline Meyer, Daniel Gilbert, François Gillet, M. Moskura, M. Franchi, et al.. Using "bryophytes and their associated testate amoeba" microsystems as indicators of atmospheric pollution. Ecological Indicators, 2012, 13 (1), pp.144-151. ⟨10.1016/j.ecolind.2011.05.020⟩. ⟨hal-00654500⟩

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Richard Payne, Edward Ad Mitchell, Hung Nguyen-Viet, Daniel Gilbert. Can pollution bias peatland paleoclimate reconstruction?. Quaternary Research, 2012, 78 (2), pp.170-173. ⟨10.1016/j.yqres.2012.05.004⟩. ⟨hal-00820341⟩

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2011

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Dorine Desalme, Philippe Binet, Daniel D. Epron, Nadine Bernard, Daniel Gilbert, et al.. Atmospheric phenanthrene pollution modulates carbon allocation in red clover (Trifolium pratense L.). Environmental Pollution, 2011, 159 (10), pp.2759-2765. ⟨10.1016/j.envpol.2011.05.015⟩. ⟨hal-02649829⟩

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Dorine Desalme, Philippe Binet, Nadine Bernard, Daniel Gilbert, Marie-Laure Toussaint, et al.. Atmospheric phenanthrene transfer and effects on two grassland species and their root symbionts: A microcosm study. Environmental and Experimental Botany, 2011, 71, pp.146-151. ⟨hal-00695268⟩

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Vincent E. J. Jassey, Genevieve Chiapusio, Edward A. D. Mitchell, Philippe Binet, Marie-Laure Toussaint, et al.. Fine-scale horizontal and vertical micro-distribution patterns of testate amoebae along a narrow Fen/Bog gradient.. Microbial ecology, 2011, 61 (2), pp.374-385. ⟨10.1007/s00248-010-9756-9⟩. ⟨hal-00682493v2⟩

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Vincent E. J. Jassey, Geneviève Chiapusio, Daniel Gilbert, Alexandre Buttler, Marie-Laure Toussaint, et al.. Experimental climate effect on seasonal variability of polyphenol/phenoloxidase interplay along a narrow fen-bog ecological gradient in Sphagnum fallax. Global Change Biology, 2011, 17 (9), pp.2945-2957. ⟨10.1111/j.1365-2486.2011.02437.x⟩. ⟨hal-00682513⟩

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Vincent E. J. Jassey, Daniel Gilbert, Philippe Binet, Marie-Laure Toussaint, Geneviève Chiapusio. Effect of a temperature gradient on Sphagnum fallax and its associated living microbial communities: a study under controlled conditions.. Canadian Journal of Microbiology, 2011, 57 (3), pp.226-235. ⟨hal-00682501v2⟩

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Vincent E. J. Jassey, Daniel Gilbert, Philippe Binet, Marie Toussaint, Genevieve Chiapusio. Effect of a temperature gradient on Sphagnum fallax and its associated living microbial communities: a study under controlled conditions. Canadian Journal of Microbiology, 2011, 57 (3), pp.226 - 235. ⟨10.1139/W10-116⟩. ⟨hal-02651676⟩

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2010

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Juliette Fabure, Caroline Meyer, F.-O. Denayer, André Gaudry, Daniel Gilbert, et al.. Accumulation Capacities of Particulate Matter in an Acrocarpous and a Pleurocarpous Moss Exposed at Three Differently Polluted Sites (Industrial, Urban and Rural). Water, Air, and Soil Pollution, 2010, 212, pp.205-217. ⟨10.1007/s11270-010-0333-0⟩. ⟨hal-00451897⟩

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Caroline Meyer, Daniel Gilbert, André Gaudry, Marielle Franchi, Hung Nguyen-Viet, et al.. Relationship of Atmospheric Pollution Characterized by gas (NO2) and particles (PM10) to Microbial Communities Living in Bryophytes at Three Differently Polluted Sites (Rural, Urban and Industrial).. Microbial ecology, 2010, 59 (2), pp.324-334. ⟨10.1007//s00248-009-9580-2⟩. ⟨hal-00413828⟩

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Edward A. D. Mitchell, Daniel Gilbert. Meeting Report: 5th International Symposium on Testate Amoebae (ISTA-5), Montbéliard, France 14-17 September 2009 - Present status of testate amoeba research, knowledge gaps and research priorities. Protist, 2010, in press, pp.00. ⟨hal-00457015⟩

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Adeline A. J. Wall, Michel Magny, Laurent Millet, Daniel Gilbert. Les changements climatiques et les variations d'assemblages de Thécamoebiens au lac du Lautrey (Jura, France) au cours de la transition Tardiglaciaire-Holocène. Climatic changes during the Lateglacial-Holocene transition as reflected by variations in testate amoeba assemblages at Lake Lautrey (Jura Mountains, eastern France). Quaternaire, 2010, pp.000. ⟨hal-00432547⟩

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Adeline A.J. Wall, Daniel Gilbert, Michel Magny, Edward A.D. Mitchell. Testate amoeba analysis of lake sediments: impact of filter size and total count on estimates of diversity, species richness and assemblage structure.. Journal of Paleolimnology, 2010, 43, pp.689-704. ⟨10.1007/s10933-009-9360-5⟩. ⟨hal-00401808⟩

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Adeline A. J. Wall, Michel Magny, Edward A.D. Mitchell, Boris Vannière, Daniel Gilbert. Response of testate amoeba assemblages to environmental and climatic changes during the Lateglacial-Holocene transition at Lake Lautrey (Jura Mountains, eastern France). Journal of Quaternary Science, 2010, pp.000. ⟨10.1002/jqs.1377⟩. ⟨hal-00432529⟩

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2009

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Thomas Deforet, Pierre Marmonier, Dominique Rieffel, Nadia Crini, Patrick Giraudoux, et al.. Do parafluvial zones have an impact in regulating river pollution? Spatial and temporal dynamics of nutrients, carbon, and bacteria in a large gravel bar of the Doubs River (France). Hydrobiologia, 2009, 623 (1), pp.235-250. ⟨10.1007/s10750-008-9661-0⟩. ⟨halsde-01072139⟩

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2008

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Rebekka R.E. Artz, Stephen J. Chapman, Andy Siegenthaler, Edward A. D. Mitchell, Alexandre Buttler, et al.. Functional microbial diversity in regenerating cutover peatlands responds to vegetation succession. Journal of Applied Ecology, 2008, 45 (6), pp.1799-1809. ⟨10.1111/j.1365-2664.2008.01573.x⟩. ⟨hal-00337379⟩

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Fatima Laggoun-Défarge, Edward P. Mitchell, Daniel Gilbert, Jean-Robert Disnar, Laure Comont, et al.. Cut-over peatland regeneration assessment using organic matter and microbial indicators (bacteria and testate amoebae).. Journal of Applied Ecology, 2008, 45 (2), pp.716-727. ⟨10.1111/j.1365-2664.2007.01436.x⟩. ⟨hal-00142062⟩

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2007

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Nguyen-Viet Hung, Nadine Bernard, Edward P. Mitchell, Jérôme Cortet, Pierre-Marie Badot, et al.. Relationship Between Testate Amoeba (Protist) Communities and Atmospheric Heavy Metals Accumulated in Barbula indica (Bryophyta) in Vietnam. Microbial ecology, 2007, 53 (1), pp.53-65. ⟨10.1007/s00248-006-9108-y⟩. ⟨hal-00382582⟩

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Nguyen-Viet Hung, Daniel Gilbert, E. Mitchell, Pierre-Marie Badot, Nadine Bernard. Effects of Experimental Lead Pollution on the Microbial Communities Associated with Sphagnum fallax (Bryophyta). Microbial ecology, 2007, 54 (2), pp.232-241. ⟨10.1007/s00248-006-9192-z⟩. ⟨hal-00382580⟩

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Hung Nguyen-Viet, Nadine Bernard, Edward P. Mitchell, Pierre-Marie Badot, Daniel Gilbert. Effect of lead pollution on testate amoebae communities living in Sphagnum fallax: An experimental study. Ecotoxicology and Environmental Safety, 2007, 69 (1), pp.130-138. ⟨10.1016/j.ecoenv.2007.02.007⟩. ⟨hal-00382579⟩

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2006

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Estelle Bortoluzzi, Daniel Epron, Andy Siegenthaler, Daniel Gilbert, Alexandre Buttler. Carbon balance of a European mountain bog at contrasting stages of regeneration. New Phytologist, 2006, 172 (4), pp.708-718. ⟨10.1111/j.1469-8137.2006.01859.x⟩. ⟨hal-00382587⟩

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Louis-Bertin Jugnia, Télesphore Sime-Ngando, Daniel Gilbert. Dynamics and estimates of growth and loss rates of bacterioplankton in a temperate freshwater system. FEMS Microbiology Ecology, 2006, 58 (1), pp.23-32. ⟨10.1111/j.1574-6941.2006.00145.x⟩. ⟨hal-00382586⟩

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Louis-B Jugnia, Télesphore Sime-Ngando, Daniel Gilbert. Dynamics and estimates of growth and loss rates of bacterioplankton in a temperate freshwater system. FEMS Microbiology Ecology, 2006, 58 (1), pp.23-32. ⟨10.1111/j.1574-6941.2006.00145.x⟩. ⟨hal-00525947⟩

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2004

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Edward Mitchell, Daniel Gilbert. Vertical micro-distribution and response to nitrogen deposition of testate amoebae in Sphagnum. Journal of Eukaryotic Microbiology, 2004, 51 (4), pp.480-490. ⟨10.1111/j.1550-7408.2004.tb00400.x⟩. ⟨hal-02683464⟩

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Hung Nguyen-Viet, Daniel Gilbert, Nadine Bernard, Edward Mitchell, Pierre-Marie Badot. Relationship between atmospheric pollution characterized by NO2 concentrations and testate amoebae density and diversity. Acta Protozoologica, 2004, 43 (3), pp.233-239. ⟨hal-02675671⟩

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2003

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Steve Chapman, Alexandre Buttler, Andre-Jean Francez, Fatima Laggoun-Défarge, Harri Vasander, et al.. Exploitation of northern peatlands and biodiversity maintenance: a conflict between economy and ecology.. Frontiers in Ecology and the Environment, 2003, 1 (10), pp.525-532. ⟨hal-00069337⟩

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Daniel Gilbert, Edward Mitchell, Christian Amblard, Gilles Bourdier, André-Jean Francez. Population dynamics and food preferences of the testate amoeba Nebela tincta major-bohemica-collaris complex (Protozoa) in a Sphagnum peatland. Acta Protozoologica, 2003, 42 (2), pp.99-104. ⟨hal-02677116⟩

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E.A.D. Mitchell, Daniel Gilbert, A. Buttler, C. Amblard, P. Grosvernier, et al.. Structure of microbial communities in Sphagnum peatlands and effect of atmospheric carbon dioxide enrichment. Microbial ecology, 2003, 46 (2), pp.187-199. ⟨10.1007/s00248-002-0008-5⟩. ⟨hal-02678346⟩

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Conference papers

2023

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Alexandre Lhosmot, Jean-Sébastien Moquet, Adrien Jacotot, Marc Steinmann, Laure Gandois, et al.. Peatlands methane origin and fluxes to the atmosphere: towards an integrative conceptual model of a temperate French peatland. EGU23, Apr 2023, Vienne (AUT), Austria. ⟨10.5194/egusphere-egu23-13093⟩. ⟨insu-04182733⟩

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2021

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Sébastien Gogo, Daniel Gilbert, Geneviève Magnon, Laurent André, Guillaume Bertrand, et al.. Restoration peatland and eLTER, case of France. 12th European Conference on Ecological Restoration (SERE), University of Alicante, Sep 2021, Online, France. ⟨hal-03462883⟩

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2016

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Fatima Laggoun-Défarge, Alexandre Buttler, Frédéric Delarue, Daniel D. Epron, Daniel Gilbert, et al.. Effects of experimental climate warming on C sink function in a temperate peatland. 15th International Peat Congress, Aug 2016, Kuching, Malaysia. ⟨insu-01384716⟩

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2015

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Fatima Laggoun-Défarge, Arnaud Huguet, Frédéric Delarue, Vincent E. J. Jassey, Edward A.D. Mitchell, et al.. A multiproxy approach of environmental changes in the last millennia reconstructed from an ombrotrophic peat archive (Frasne mire, France). 27th International Meeting on Organic Geochemistry, Sep 2015, Prague, Czech Republic. ⟨insu-01291170⟩

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2013

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Arnaud Huguet, Vincent E. J. Jassey, Fatima Laggoun-Défarge, Sylvie Derenne, Daniel Gilbert, et al.. Combination of branched GDGTs and testate amoebae for the reconstruction of past climate change in a French peatland. EGU General Assembly, Apr 2013, Vienne, Austria. ⟨insu-00839567⟩

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2010

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Dorine Desalme, Philippe Binet, Geneviève Chiapusio, Daniel Gilbert, Jean-Claude Roy, et al.. Atmospheric phenanthrene exposure of micro-ecosystems in experimental chambers. SETAC Europe : 20th Annual Meeting Science and Technology for Environmental Protection, May 2010, SEVILLE, Spain. pp.102. ⟨hal-00488111⟩

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2009

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Dorine Desalme, Geneviève Chiapusio, Philippe Binet, Daniel Gilbert, Marie-Laure Toussaint, et al.. Pollution atmosphérique en phénanthrène sur un système sol-plante-microorganismes symbiotiques. 10e Journées d'Etude des Sols (JES), May 2009, Strasbourg, France. pp.123-124. ⟨hal-00413915⟩

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Daniel Gilbert, Nadine Bernard. Using Bryophyte/associated microorganism microsystems to characterize the impact of contaminants on ecosystems: are testate amoebae the best microbial group for disturbance bioindication ?. 5th International Symposium on Testate amoebae, Sep 2009, MONTBELIARD, France. ⟨hal-00421408⟩

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Vincent Jassey, Geneviève Chiapusio, Philippe Binet, Marie-Laure Toussaint, Daniel Gilbert. Impact d'une hausse de la température sur le système sphaigne-microorganismes. Impact d'une hausse de la température sur le système sphaigne-microorganismes, May 2009, France. pp.63-64. ⟨hal-00413910⟩

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Vincent Jassey, Geneviève Chiapusio, Philippe Binet, Marie-Laure Toussaint, Daniel Gilbert. Impact of elevated temperature on Testate Amoebae in Sphagnum fallax peatland: a microcosm study and perspectives in situ.. 5th International Symposium on Testate Amoebae, Sep 2009, France. pp.18. ⟨hal-00413914⟩

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Caroline Meyer, Daniel Gilbert, André Gaudry, Marielle Franchi, Franck Denayer, et al.. Effect of Atmospheric Particulate Pollution (PM10) and Nitrogen Dioxide (NO2) on Testate Amoebae Communities Living in Microsystems "Bryophytes-Microorganisms". 5th International Symposium on Testate Amoebae ISTA-5, Sep 2009, Montbéliard, France. ⟨hal-00413823⟩

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Andy Siegenthaler, Andreas Gattinger, Andre-Jean Francez, Daniel Gilbert, Alexandre Buttler, et al.. Various Litter Species and High Water-Table Levels Hamper Type II Methanotrophs in a Bare Peatland Regeneration Experiment. 2nd International Symposium on “Peatlands in the Global Carbon Cycle” will be held in Prague, Czech Republic on 25 - 30 September 2009, Sep 2009, Prague, Czech Republic. ⟨hal-00421405⟩

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Andy Siegenthaler, A. Artz, Andre-Jean Francez, Alexandre Buttler, Emanuela Samaritani, et al.. Contrasted relationships between type I and type II methanotrophs, the conditions found in typical regeneration stages across European peatlands and the elapsed time since abandonment of the peat cutting.. Peatnet International Congress ‘Carbon in Peatlands', Sep 2009, Praha, Czech Republic. ⟨hal-00448351⟩

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Andy Siegenthaler, Andreas Gattinger, Andre-Jean Francez, Daniel Gilbert, Alexandre Buttler, et al.. Various litter species and high water-table levels hamper type II methanotrophs in a bare peatland regeneration experiment.. Peatnet International Congress ‘Carbon in Peatlands', Oct 2009, Praha, Czech Republic. ⟨hal-00448341⟩

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Andy Siegenthaler, Rebekka R.E. Artz, Andre-Jean Francez, Alexandre Buttler, Emanuela Samaritani, et al.. Contrasted Relationships Between Type I and Type II Methanotrophs, The Conditions Found in Typical Regeneration Stages Across European Peatlands and the Elapsed Time Since Abandonment of the Peat Cutting. 2nd International Symposium on “Peatlands in the Global Carbon Cycle”, Sep 2009, Prague, Czech Republic. ⟨hal-00421406⟩

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Adeline A.J. Wall, Michel Magny, Edward A. D. Mitchell, Boris Vannière, Daniel Gilbert. Response of testate amoeba assemblages to environmental and climatic changes during the Lateglacial-Holocene transition at Lake Lautrey (Jura Mountains, eastern France). 5th International Symposium on Testate Amoebae, Sep 2009, MONTBELIARD, France. ⟨hal-00421407⟩

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Adeline A.J. Wall, Daniel Gilbert, Michel Magny, Edward P. Mitchell. Testate amoeba analysis of lake sediments: impact of filter size and total count on estimates of density, species richness and assemblage structure. 5th International Symposium on Testate Amoebae, Sep 2009, MONTBELIARD, France. ⟨hal-00421409⟩

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Adeline A. J. Wall, Daniel Gilbert, Michel Magny. Ecologie actuelle des Thécamoebiens des lacs. XVème Forum des Jeunes Chercheurs, Jun 2009, Dijon, France. ⟨hal-00480375⟩

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Adeline A. J. Wall, Michel Magny, Edward A.D. Mitchell, Boris Vannière, Daniel Gilbert. Environmental and climatic changes during the Lateglacial-Holocene transition as reflected by variations in testate amoeba assemblages at Lake Lautrey (Jura Mountains, eastern France). 5th ISTA: International Symposium on Testate Amoeba, Sep 2009, Montbeliard, France. ⟨hal-00432638⟩

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Adeline A. J. Wall, Daniel Gilbert, Michel Magny, Edward A.D. Mitchell. Testate amoeba analysis of lake sediments: impact of filter size and total count on estimates of density, species richness and assemblage structure.. 5th ISTA: International Symposium on Testate Amoeba, Sep 2009, Montbeliard, France. ⟨hal-00432640⟩

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2008

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Dorine Desalme, Philippe Binet, Geneviève Chiapusio, Nadine Bernard, Marie-Laure Toussaint, et al.. Impact du phénanthrène sur les microorganismes symbiotiques du trèfle violet (Trifolium pratense). Journées Francophones Mycorrhizes, Sep 2008, Dijon, France. p 32. ⟨hal-00413917⟩

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Vincent Jassey, Geneviève Chiapusio, Philippe Binet, Marie-Laure Toussaint, Daniel Gilbert. Impact of temperature increase on Sphagnum / microorganisms system : a microcosm study. Interaction entre les processus physico-chimiques et microbiologiques dans l'environnement, Oct 2008, France. ⟨hal-00413911⟩

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Fatima Laggoun-Défarge, Daniel Gilbert, Alexandre Buttler, Daniel Epron, Andre-Jean Francez, et al.. Effects of experimental warming on carbon sink function of a temperate pristine mire : the PEATWARM project.. International Peat Society Congress, Jun 2008, Tullamore, Ireland. ⟨hal-00448378⟩

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Fatima Laggoun-Défarge, Daniel Gilbert, Alexandre Buttler, Daniel Epron, Andre-Jean Francez, et al.. Effects of experimental warming on Carbon sink function of a temperate pristine mire : The project PEATWARM. Proceedings of the 13th International Peat Congress, Ireland, Tullamore, 8-13 June 2008, IPS (Finland), 2008, Tulamore, Finland. pp.599-602. ⟨insu-00321910⟩

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Caroline Meyer, Daniel Gilbert, Marielle Franchi, André Gaudry, Franck Denayer, et al.. Interactions between particulate air pollution and environmental variables on microbial communities living in bryophytes: in situ and experimental studies. SETAC Europe 18th, May 2008, Varsovie, Poland. ⟨hal-00413817⟩

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Adeline A. J. Wall, Michel Magny, Jean-François Carrias, Daniel Gilbert. Distribution des amibes à thèque dans 3 lacs français.. 7ème CILO - Congrès International de Limnologie-Océanographie, Oct 2008, Rouen, France. ⟨hal-00432655⟩

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Adeline A. J. Wall, Michel Magny, Daniel Gilbert, Laurent Millet, Boris Vannière, et al.. Les Thécamoebiens : marqueur des changements du climat et de l'environnement. Exemple de l'enregistrement Tardiglaciaire / Holocène du lac du Lautrey (Jura, France). Colloque International Q6 : Biodiversité au Quaternaire : Climats, Environnements et Peuplements, Feb 2008, Montpellier, France. ⟨hal-00432645⟩

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Adeline A. J. Wall, Michel Magny, Daniel Gilbert. Réponse des Thécamoebiens subfossiles (Protistes, Rhizopodes) aux variations du climat : Exemple de l'enregistrement Tardiglaciaire / Holocène du lac du Lautrey (Jura). XIVème Forum des Jeunes Chercheurs, Jun 2008, Besançon, France. ⟨hal-00432654⟩

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Adeline A. J. Wall, Michel Magny, Daniel Gilbert, Laurent Millet, Boris Vannière, et al.. Subfossil thecamoebians response to climate variations during the transition Lateglacial / Holocene : a case study from Lake Lautrey (Jura, France). EGU General Assembly 2008. Session: Climate: Past, Present, Future - Natural and anthropogenic environmental change as evidenced in high-resolution continental archives, Apr 2008, Vienne, Austria. ⟨hal-00432644⟩

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Adeline A. J. Wall, Michel Magny, Laurent Millet, Daniel Gilbert. Les Thécamoebiens » : Un nouveau marqueur paléoenvironnemental des changements du climat et de l'environnement.. Séminaire Interuniversitaire 2008 : « Assemblages », Mar 2008, Mandeure, France. ⟨hal-00432657⟩

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Adeline A. J. Wall, Daniel Gilbert, Michel Magny. Les Thécamoebiens des lacs : écologie actuelle et paléoenvironnement.. JFR'08 : Journée Francophone de la Recherche 2008, Nov 2008, Tokyo, Japon. ⟨hal-00432653⟩

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2007

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Adeline A. J. Wall, Daniel Gilbert, Michel Magny. Structure des communautés microbiennes benthiques lacustres : comparaison entre un lac eutrophe et un lac mésotrophe (Jura, France). 50ème Congrès de l'Association Française de Limnologie (AFL), Nov 2007, Toulouse, France. ⟨hal-00432659⟩

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Adeline A. J. Wall, Michel Magny, Daniel Gilbert. The role of Testate Amoebae in benthic microbial communities in lakes (Jura, France): ecological and paleo-ecological studies. 5th Symposium for European Freshwater Sciences, Jul 2007, Palerme, Italy. ⟨hal-00432646⟩

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2006

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Rebekka R.E. Artz, John L. Campbell, Alexandre Buttler, Andre-Jean Francez, Fatima Laggoun-Défarge, et al.. Reconciling commercial exploitation of peat with biodiversity in peatland ecosystems (RECIPE).. European Society of Wetland Scientists Meeting, 2006, Bangor, United Kingdom. ⟨hal-00090548⟩

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Daniel Gilbert, Adeline A. J. Wall, Michel Magny. The role of Testate Amoebae in benthic microbial communities in lakes.. International Symposium on Testate Amoebae, Sep 2006, Antwerp, Belgium. ⟨hal-00432648⟩

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Adeline A. J. Wall, Daniel Gilbert, Michel Magny. Sub-fossils Testate Amoebae in sediments from lake Lautrey (Jura, France) during the transition between the Lateglacial and the Holocene (12 800-9 000 yrs BP). International Symposium on Testate Amoebae, Sep 2006, Antwerp, Belgium. ⟨hal-00432647⟩

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Adeline A. J. Wall, Michel Magny, Daniel Gilbert. Testate Amoebae: an example of Non-Pollen-Polymorphs in lacustrine sediments from Lateglacial and Holocene (Jura, France). 2nd International Workshop on Non-Pollen-Polymorphs (NPP), Aug 2006, Innsbrück, Austria. ⟨hal-00432651⟩

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2005

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A.J. Francez, Daniel Gilbert. Ecologie microbienne de tourbières en régénération. Origines, dynamique et conservation des tourbieres, Oct 2005, Saint-Etienne, France. n.p. ⟨hal-02832371⟩

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2004

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Fatima Laggoun-Défarge, Edward P. Mitchell, Daniel Gilbert, Barry Warner, Laure Comont, et al.. Biochemical characteristics of peat organic matter and distribution of testate amoebae patterns in two naturally regenerating cutover Sphagnum peatlands of the Jura Mountains.. 12th International Peat Congress "Wise Use of Peatlands", 2004, Tampere, Finland. ⟨hal-00084946⟩

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Carine Maitre, Daniel Gilbert, Alexandre Buttler, Daniel Epron, Andre-Jean Francez, et al.. Economic and sociological approaches of french peatlands.. 12th International Peat Congress: Wise Use of Peatlands, 2004, Tampere, Finland. ⟨hal-00090535⟩

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E. Mitchell, Steve Chapman, Alexandre Buttler, Jean Combe, Andre-Jean Francez, et al.. Reconciling commercial exploitation of peat with biodiversity in peatland ecosystems (EU Project RECIPE). 7th INTECOL International, Wetlands Conference, 2004, Utrecht, Netherlands. ⟨hal-00090538⟩

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Book sections

2006

ref_biblio

Daniel Gilbert, Edward Mitchell. Microbial diversity in Sphagnum peatlands. Peatlands: evolution and records of environmental and climatic changes, 9, Elsevier, 2006, Developments in Earth Surface Processes, 0-444-52883-0 978-0-444-52883-4. ⟨hal-02816238⟩

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Books

2021

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Sylvain Pellerin, Laure Bamière, Isabelle Savini, Olivier Rechauchère, Camille Launay, et al.. Stocker du carbone dans les sols français. Éditions Quæ, pp.232, 2021, Matière à débattre et décider, 978-2-759-23148-5. ⟨10.35690/978-2-7592-3149-2⟩. ⟨hal-03429981⟩

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