François GILLET

Chrono-environnement - UMR 6249 CNRS/UFC
Campus de la Bouloie
16 rue de Gray
25030 Besançon cedex

François Gillet

Emeritus Professor
DYNABIO

francois.gillet@-Code to remove to avoid SPAM-univ-fcomte.fr
+33 (0)7 88 37 07 76, room -110M

  • My research activities focus on :
  • the classification, diversity, ecology and dynamics of vegetation ;
  • community ecology and numerical ecology ;
  • hierarchy theory and dynamic modelling of ecological systems;
  • adaptive management of socio-ecological systems.

Research themes :

  • Plant and animal biodiversity of permanent grasslands in relation to changes in agricultural practices; research into the determinism of taxonomic, phylogenetic and functional diversity at different scales; statistical and dynamic modelling applied to ecology and palaeoecology (UFC).
  • Observational and experimental studies of biotic interactions in sylvo-pastoral ecosystems; spatially explicit modelling of the dynamics of sylvo-pastoral systems and landscapes; ecology of microbial communities (Ecole Polytechnique Fédérale de Lausanne, Switzerland).
  • Diversity and dynamics of vegetation in wooded pastures in the Jura, observational studies and modelling of phytocenosis dynamics; implementation of a protocol for monitoring vegetation in alluvial zones (University of Neuchâtel, Switzerland).
  • Botanical and phytosociological inventory of the peat bogs of the Doubs, initial hypotheses on their regeneration and genesis; doctoral thesis in forest phytosociology, initial developments in integrated synusial phytosociology (University of Franche-Comté).

Projects in progress:

IRP Fo

 

 

Journal articles

2022

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Riccardo Guarino, Marina Guccione, François Gillet. Plant communities, synusiae and the arithmetic of a sustainable classification. Vegetation Classification and Survey, 2022, 3, pp.7-13. ⟨10.3897/VCS.60951⟩. ⟨hal-03573758⟩
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https://hal.science/hal-03573758/file/Guarino2022_VCS.pdf BibTex
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Jonathan Lesven, Milva Druguet Dayras, Romain Borne, Cécile C Remy, François Gillet, et al.. Testing a new automated macrocharcoal detection method applied to a transect of lacustrine sediment cores in eastern Canada. Quaternary Science Reviews, 2022, 295, ⟨10.1016/j.quascirev.2022.107780⟩. ⟨hal-03808471⟩
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2021

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Idoia Biurrun, Remigiusz Pielech, Iwona Dembicz, François Gillet, Łukasz Kozub, et al.. Benchmarking plant diversity of Palaearctic grasslands and other open habitats. Journal of Vegetation Science, 2021, 32 (4), pp.e13050. ⟨10.1111/JVS.13050⟩. ⟨hal-03345369⟩
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https://hal.science/hal-03345369/file/Benchmarking%20plant%20diversity%20of%20Palaearctic%20grasslands%20and%20other%20open%20habitats.pdf BibTex
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Nicolas Chemidlin Prévost-Bouré, B. Karimi, Sophie Sadet-Bourgeteau, C. Djemiel, M. Brie, et al.. Microbial transfers from permanent grassland ecosystems to milk in dairy farms in the Comté cheese area. Scientific Reports, 2021, 11 (1), pp.18144. ⟨10.1038/s41598-021-97373-6⟩. ⟨hal-03345380⟩
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https://hal.science/hal-03345380/file/Chemidlin%20Pr%C3%A9vost-Bour%C3%A9_Scientific%20Reports_2021.pdf BibTex
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Iwona Dembicz, Jürgen Dengler, François Gillet, Thomas Matthews, Manuel Steinbauer, et al.. Fine-grain beta diversity in Palaearctic open vegetation: variability within and between biomes and vegetation types. Vegetation Classification and Survey, 2021, 2, pp.293-304. ⟨10.3897/VCS/2021/77193⟩. ⟨hal-03533836⟩
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Iwona Dembicz, Jürgen Dengler, Manuel Steinbauer, Thomas Matthews, Sándor Bartha, et al.. Fine‐grain beta diversity of Palaearctic grassland vegetation. Journal of Vegetation Science, 2021, 32 (3), ⟨10.1111/jvs.13045⟩. ⟨hal-03286015⟩
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https://univ-fcomte.hal.science/hal-03286015/file/jvs.13045.pdf BibTex
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Thibault Moulin, Antoine Perasso, Pierluigi Calanca, François Gillet. DynaGraM: A process-based model to simulate multi-species plant community dynamics in managed grasslands. Ecological Modelling, 2021, 439, pp.109345. ⟨10.1016/j.ecolmodel.2020.109345⟩. ⟨hal-03092517⟩
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https://hal.science/hal-03092517/file/S0304380020304129.pdf BibTex
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Corentin Nicod, François Gillet. Recent changes in mountain hay meadows of high conservation value in eastern France. Applied Vegetation Science, 2021, 24 (2), ⟨10.1111/avsc.12573⟩. ⟨hal-03202361⟩
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Benoit Richard, Jean‐luc Dupouey, Emmanuel Corcket, Didier Alard, Frédéric Archaux, et al.. The climatic debt is growing in the understorey of temperate forests: Stand characteristics matter. Global Ecology and Biogeography, 2021, 30 (7), pp.1474-1487. ⟨10.1111/geb.13312⟩. ⟨hal-03293479⟩
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https://hal.science/hal-03293479/file/Richard_al_2021_preprint.pdf BibTex
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Jinghui Zhang, François Gillet, Sándor Bartha, Juha Mikael Alatalo, Idoia Biurrun, et al.. Scale dependence of species–area relationships is widespread but generally weak in Palaearctic grasslands. Journal of Vegetation Science, 2021, 32 (3), pp.e13044. ⟨10.1111/jvs.13044⟩. ⟨hal-03286001⟩
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https://univ-fcomte.hal.science/hal-03286001/file/Zhang-Gillet-Bartha-et-al-2021-JVS_ms-final.pdf BibTex

2020

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Corentin Nicod, Geoffroy Couval, Patrick Giraudoux, François Gillet. Vole disturbances and plant community diversity in a productive hay meadow. Acta Oecologica, 2020, 106, pp.103585. ⟨10.1016/j.actao.2020.103585⟩. ⟨hal-03148208⟩
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https://hal.science/hal-03148208/file/S1146609X20300771.pdf BibTex

2019

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Vincent Bretagnolle, Marc Benoît, Mathieu Bonnefond, Vincent Breton, Jon Church, et al.. Action-orientated research and framework: insights from the French long-term social-ecological research network. Ecology and Society, 2019, 24 (3), pp.10. ⟨10.5751/ES-10989-240310⟩. ⟨hal-02413687⟩
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https://hal.science/hal-02413687/file/pub00064298.pdf BibTex
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Charles Henriot, Daniel Martak, Quentin Cuenot, Christophe Loup, Hélène Masclaux, et al.. Occurrence and ecological determinants of the contamination of floodplain wetlands with Klebsiella pneumoniae and pathogenic or antibiotic-resistant Escherichia coli. FEMS Microbiology Ecology, 2019, 95 (8), ⟨10.1093/femsec/fiz097⟩. ⟨hal-02315686⟩
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https://hal.science/hal-02315686/file/Henriot2019_FEMS.pdf BibTex
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Corentin Nicod, Bérangère Leys, Yorick Ferrez, Vincent Manneville, Arnaud Mouly, et al.. Towards the assessment of biodiversity and management practices in mountain pastures using diagnostic species?. Ecological Indicators, 2019, 107, pp.1-9. ⟨10.1016/j.ecolind.2019.105584⟩. ⟨hal-02270642⟩
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https://institut-agro-dijon.hal.science/hal-02270642/file/S1470160X1930576X.pdf BibTex
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José Zapata-Carbonell, Carole Bégeot, Nicolas Carry, Flavien Choulet, Pauline Delhautal, et al.. Spontaneous ecological recovery of vegetation in a red gypsum landfill: Betula pendula dominates after 10 years of inactivity. Ecological Engineering, 2019, ⟨10.1016/j.ecoleng.2019.03.013⟩. ⟨insu-02537945⟩
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https://insu.hal.science/insu-02537945/file/S0925857419301065.pdf BibTex

2018

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Mohamed Bourioug, Olivier Girardclos, François Gillet, Laurence Alaoui-Sehmer, Pascale Bourgeade, et al.. Sewage sludge as a soil amendment in a Larix decidua plantation: Effects on tree growth and floristic diversity. Science of the Total Environment, 2018, 621, pp.291 - 301. ⟨10.1016/j.scitotenv.2017.11.283⟩. ⟨hal-01779745⟩
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Jurgen Dengler, Viktoria Wagner, François Gillet, Iwona Dembicz, Itziar García-Mijangos, et al.. GrassPlot – a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia, 2018, 48 (3), pp.331-347. ⟨hal-01962684⟩
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François Gillet, Philippe Julve. The integrated synusial approach to vegetation classification and analysis. Phytocoenologia, 2018, 48 (2), pp.141-152. ⟨10.1127/phyto/2017/0164⟩. ⟨hal-01779749⟩
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Borja Jiménez-Alfaro, Susana Suárez-Seoane, Milan Chytrý, Stephan Hennekens, Wolfgang Willner, et al.. Modelling the distribution and compositional variation of plant communities at the continental scale. Diversity and Distributions, 2018, 24 (7), pp.978-990. ⟨10.1111/ddi.12736⟩. ⟨hal-02357324⟩
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https://hal.science/hal-02357324/file/679470.pdf BibTex
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Thibault Moulin, Antoine Perasso, François Gillet. Modelling vegetation dynamics in managed grasslands: Responses to drivers depend on species richness. Ecological Modelling, 2018, 374, pp.22 - 36. ⟨10.1016/j.ecolmodel.2018.02.013⟩. ⟨hal-01779748⟩
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https://hal.science/hal-01779748/file/Moulin2018_EcolMod_msR2.pdf BibTex

2017

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Bertrand Fournier, Arnaud Mouly, Marco Moretti, François Gillet. Contrasting processes drive alpha and beta taxonomic, functional and phylogenetic diversity of orthopteran communities in grasslands. Agriculture, Ecosystems & Environment, 2017, 242, pp.43 - 52. ⟨10.1016/j.agee.2017.03.021⟩. ⟨hal-01516588⟩
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Daniel Joly, François Gillet. Interpolation of temperatures under forest cover on a regional scale in the French Jura Mountains. International Journal of Climatology, 2017, 37 (S1), pp.659-670. ⟨10.1002/joc.5029⟩. ⟨hal-01494295⟩
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Alexander Peringer, Alexandre Buttler, François Gillet, Ileana Stupariu, Kiowa A. Schulze, et al.. Disturbance-grazer-vegetation interactions maintain habitat diversity in mountain pasture-woodlands. Ecological Modelling, 2017, 359, pp.301 - 310. ⟨10.1016/j.ecolmodel.2017.06.012⟩. ⟨hal-01665868⟩
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2016

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Bertrand Fournier, Arnaud A Mouly, François Gillet. Multiple assembly rules drive the co-occurrence of orthopteran and plant species in grasslands: Combining network, functional and phylogenetic approaches. Frontiers in Plant Science, 2016, 7, pp.1224. ⟨10.3389/fpls.2016.01224⟩. ⟨hal-01429221⟩
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https://hal.science/hal-01429221/file/fpls-07-01224.pdf BibTex
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François Gillet, Leslie Mauchamp, Pierre-Marie Badot, Arnaud Mouly. Recent changes in mountain grasslands: a vegetation resampling study. Ecology and Evolution, 2016, 6 (8), pp.2333-2345. ⟨10.1002/ece3.1987⟩. ⟨hal-01287302⟩
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https://hal.science/hal-01287302/file/Gillet2016_EcolEvol.pdf BibTex
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François Gillet, Leslie Mauchamp, Pierre‐marie Badot, Arnaud Mouly. Recent changes in mountain grasslands: a vegetation resampling study. Ecology and Evolution, 2016, 6 (8), pp.2333-2345. ⟨10.1002/ece3.1987⟩. ⟨hal-04522942⟩
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Leslie Mauchamp, Arnaud Mouly, Pierre-Marie Badot, François Gillet. Impact of nitrogen inputs on multiple facets of plant biodiversity in mountain grasslands: does nutrient source matter?. Applied Vegetation Science, 2016, 19 (2), pp.206-217. ⟨10.1111/avsc.12214⟩. ⟨hal-01259898⟩
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Alexander Peringer, Kiowa A. Schulze, Ileana Stupariu, Mihai-Sorin Stupariu, Gert Rosenthal, et al.. Multi-scale feedbacks between tree regeneration traits and herbivore behavior explain the structure of pasture-woodland mosaics. Landscape Ecology, 2016, 31 (4), pp.913-927. ⟨10.1007/s10980-015-0308-z⟩. ⟨hal-01259876⟩
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Alexander Peringer, François Gillet, Gert Rosenthal, Ioana Stoicescu, Ileana Pătru-Stupariu, et al.. Landscape-scale simulation experiments test Romanian and Swiss management guidelines for mountain pasture-woodland habitat diversity. Ecological Modelling, 2016, 330, pp.41-49. ⟨10.1016/j.ecolmodel.2016.03.013⟩. ⟨hal-01301774⟩
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2015

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Simon Belle, Laurent Millet, François Gillet, Valérie Verneaux, Michel Magny. Assemblages and paleo-diet variability of subfossil Chironomidae (Diptera) from a deep lake (Lake Grand Maclu, France). Hydrobiologia, 2015, 755 (1), pp.145-160. ⟨10.1007/s10750-015-2222-4⟩. ⟨hal-01117797⟩
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Miquel de Cáceres, Milan Chytrý, Emiliano Agrillo, Fabio Attorre, Zoltán Botta-Dukát, et al.. A comparative framework for broad-scale plot-based vegetation classification. Applied Vegetation Science, 2015, 18 (4), pp.543-560. ⟨10.1111/avsc.12179⟩. ⟨hal-01211250⟩
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https://hal.science/hal-01211250/file/appvegsci_a2015v18n4p543.pdf BibTex
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Bertrand Fournier, François Gillet, Renée-Claire Le Bayon, Edward A. D. Mitchell, Marco Moretti. Functional responses of multitaxa communities to disturbance and stress gradients in a restored floodplain. Journal of Applied Ecology, 2015, 52 (5), pp.1364-1373. ⟨10.1111/1365-2664.12493⟩. ⟨hal-01211251⟩
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Victor Frossard, Bruno Saussereau, Antoine Perasso, François Gillet. What is the robustness of early warning signals to temporal aggregation?. Frontiers in Ecology and Evolution, 2015, 3, pp.112. ⟨10.3389/fevo.2015.00112⟩. ⟨hal-01211252⟩
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https://hal.science/hal-01211252/file/Frossard2015_FrontiersEcolEvol.pdf BibTex
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Raul Quezada-Hinojosa, Karl B. Föllmi, François Gillet, Virginie Matera. Cadmium accumulation in six common plant species associated with soils containing high geogenic cadmium concentrations at Le Gurnigel, Swiss Jura Mountains. CATENA, 2015, 124, pp.85-96. ⟨10.1016/j.catena.2014.09.007⟩. ⟨hal-01074594⟩
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https://hal.science/hal-01074594/file/Quezada2014_Catena.pdf BibTex
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Gabriel Reboux, Steffi Rocchi, Victor Frossard, Emeline Scherer, Benoit Valot, et al.. Caractérisation microbiologique de 3193 logements français des enfants de la cohorte ELFE. Journal of Medical Mycology = Journal de Mycologie Médicale, 2015, 25 (3), pp.228. ⟨10.1016/j.mycmed.2015.06.027⟩. ⟨hal-01211279⟩
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S. Rocchi, Gabriel Reboux, V. Frossard, E. Scherer, Benoit Valot, et al.. Microbiological characterization of 3193 French dwellings of Elfe cohort children. Science of the Total Environment, 2015, 505, pp.1026-1035. ⟨10.1016/j.scitotenv.2014.10.086⟩. ⟨hal-01117795⟩
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2014

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Yorick Ferrez, Max André, François Gillet, Philippe Juillerat, Marc Philippe, et al.. Inventaire de la flore vasculaire (Ptéridophytes et Spermaphytes) de Franche-Comté : Indigénats, raretés, menaces, protections. Les Nouvelles Archives de la Flore jurassienne et du nord-est de la France, 2014, 11, pp.5-49. ⟨hal-01117800⟩
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Borja Jiménez-Alfaro, Michal Hájek, Rasmus Ejrnaes, John Rodwell, Paweł Pawlikowski, et al.. Biogeographic patterns of base-rich fen vegetation across Europe. Applied Vegetation Science, 2014, 17 (2), pp.367-380. ⟨10.1111/avsc.12065⟩. ⟨hal-00927299⟩
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Leslie Mauchamp, Arnaud Mouly, Pierre-Marie Badot, François Gillet. Impact of management type and intensity on multiple facets of grassland biodiversity in the French Jura Mountains. Applied Vegetation Science, 2014, 17 (4), pp.645-657. ⟨10.1111/avsc.12116⟩. ⟨hal-01074591⟩
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Rémi Perronne, Leslie Mauchamp, Arnaud Mouly, François Gillet. Contrasted taxonomic, phylogenetic and functional diversity patterns in semi-natural permanent grasslands along an altitudinal gradient. Plant Ecology and Evolution, 2014, 147 (2), pp.165 - 175. ⟨10.5091/plecevo.2014.885⟩. ⟨hal-01074588⟩
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https://hal.science/hal-01074588/file/Perronne2014_PlEcEvo.pdf BibTex

2013

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J. Chételat, M. Kalbermatten, K. Lannas, T. Spiegelberger, J.B. Wettstein, et al.. A contextual analysis of land-use and vegetation changes in two wooded pastures in the Swiss Jura mountains. Ecology and Society, 2013, 18 (1), pp.16. ⟨hal-02597421⟩
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Joël Chételat, Michael Kalbermatten, Kathryn S.M. Lannas, Thomas Spiegelberger, Jean-Bruno Wettstein, et al.. A Contextual Analysis of Land-Use and Vegetation Changes in Two Wooded Pastures in the Swiss Jura Mountains. Ecology and Society, 2013, 18 (1), pp.39. ⟨10.5751/ES-05287-180139⟩. ⟨hal-00768736⟩
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https://hal.science/hal-00768736/file/Che%CC%81telat2013_EcolSoc.pdf BibTex
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K. Gavazov, A. Peringer, A. Buttler, F. Gillet, T. Spiegelberger. Dynamics of forage production in pasture-woodlands of the Swiss Jura Mountains under projected climate change scenarios. Ecology and Society, 2013, 18 (1), 13 p. ⟨10.5751/ES-04974-180138⟩. ⟨hal-00808888⟩
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https://hal.science/hal-00808888/file/gr2013-pub00036263.pdf BibTex
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Konstantin S. Gavazov, Alexander Peringer, Alexandre Buttler, François Gillet, Thomas Spiegelberger. Dynamics of Forage Production in Pasture-woodlands of the Swiss Jura Mountains under Projected Climate Change Scenarios. Ecology and Society, 2013, 18 (1), pp.38. ⟨10.5751/ES-04974-180138⟩. ⟨hal-00768738⟩
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https://hal.science/hal-00768738/file/Gavazov2013_EcolSoc.pdf BibTex
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Robert Huber, Simon Briner, Alexander Peringer, Stefan Lauber, Roman Seidl, et al.. Modeling Social-Ecological Feedback Effects in the Implementation of Payments for Environmental Services in Pasture-Woodlands. Ecology and Society, 2013, 18 (2), pp.41. ⟨10.5751/ES-05487-180241⟩. ⟨hal-01074586⟩
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https://hal.science/hal-01074586/file/Huber2013a_EcolSoc.pdf BibTex
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R. Huber, A. Rigling, P. Bebi, F.S. Brand, S. Briner, et al.. Sustainable land use in mountain regions under global change: synthesis across scales and disciplines. Ecology and Society, 2013, 18 (3), 20 p. ⟨10.5751/ES-05499-180336⟩. ⟨hal-00926157⟩
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https://hal.science/hal-00926157/file/gr2013-pub00039342.pdf BibTex
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A. Peringer, S. Siehoff, J. Chételat, T. Spiegelberger, A. Buttler, et al.. Past and future landscape dynamics in pasture-woodlands of the Swiss Jura Mountains under climate change. Ecology and Society, 2013, 18 (3), 32 p. ⟨10.5751/ES-05600-180311⟩. ⟨hal-00913371⟩
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Alexander Peringer, Silvana Siehoff, Joël Chételat, Thomas Spiegelberger, Alexandre Buttler, et al.. Past and future landscape dynamics in pasture-woodlands of the Swiss Jura Mountains under climate change. Ecology and Society, 2013, 18 (3), pp.11. ⟨10.5751/ES-05600-180311⟩. ⟨hal-00768743⟩
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https://hal.science/hal-00768743/file/Peringer2013_EcolSoc.pdf BibTex

2012

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Nicolas Bernier, F. Gillet. Structural relationships among vegetation, soil fauna and humus form in a subalpine forest ecosystem: a Hierarchical Multiple Factor Analysis (HMFA). Pedobiologia, 2012, 55 (6), pp.321-334. ⟨10.1016/j.pedobi.2012.06.004⟩. ⟨mnhn-00969116⟩
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Alexandre Buttler, Konstantin Gavazov, Alexander Peringer, Silvana Siehoff, Pierre Mariotte, et al.. Conservation des pâturages boisés du Jura : défis climatiques et agro-politiques. Agrarforschung Schweiz - Recherche Agronomique Suisse, 2012, 3 (7-8), pp.346-353. ⟨hal-00768676⟩
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A. Buttler, T. Spiegelberger, J. Chételat, M. Kalbermatten, K. Lannas, et al.. Evolution récente et future des paysages sylvo-pastoraux du Parc Jurassien Vaudois. Schweizerische Zeitschrift fuer Forstwesen, 2012, 163 (12), pp.469-480. ⟨hal-02597815⟩
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A. Buttler, K. Gavazov, A. Peringer, S. Siehoff, Pierre Mariotte, et al.. Conservation des pâturages boisés du Jura : défis climatiques et agro-politiques. Agrarforschung Schweiz - Recherche Agronomique Suisse, 2012, 3 (7-8), pp.346-353. ⟨hal-02597166⟩
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Alexandre Buttler, Thomas Spiegelberger, Joël Chételat, Michael Kalbermatten, Kathryn Lannas, et al.. Evolution récente et future des paysages sylvo-pastoraux du Jura vaudois. Journal Forestier Suisse, 2012, 163 (12), pp.469-480. ⟨hal-00768728⟩
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Benjamin Dietre, Emilie Gauthier, François Gillet. Modern pollen rain and fungal spore assemblages from pasture woodlands at Lake Saint-Point (France). Review of Palaeobotany and Palynology, 2012, 186, pp.69-89. ⟨10.1016/j.revpalbo.2012.07.002⟩. ⟨hal-00768722⟩
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Mouldi Gamoun, A. Ouled Belgacem, B. Hanchi, M. Neffati, François Gillet. Effet du pâturage sur la diversité floristique des parcours arides du sud tunisien. Revue d'Écologie, 2012, 67 (3), pp.271-282. ⟨hal-00768678⟩
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Mouldi Gamoun, Azaiez Ouled Belgacem, Belgacem Hanchi, Mohamed Neffati, François Gillet. Effet du pâturage sur la diversité floristique des parcours arides du sud tunisien. Revue d'Écologie, 2012, 67 (3), pp.271-282. ⟨hal-03533295⟩
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François Gillet, Alexandre Buttler, Thomas Spiegelberger. New insights in plant community ecology. Plant Ecology and Evolution, 2012, 145 (1), pp.3. ⟨10.5091/plecevo.2012.726⟩. ⟨hal-00768675⟩
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https://hal.science/hal-00768675/file/Gillet2012_PlEcEvo.pdf BibTex
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Caroline Meyer, Daniel Gilbert, François Gillet, M. Moskura, M. Franchi, et al.. Using "bryophytes and their associated testate amoeba" microsystems as indicators of atmospheric pollution. Ecological Indicators, 2012, 13 (1), pp.144-151. ⟨10.1016/j.ecolind.2011.05.020⟩. ⟨hal-00654500⟩
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https://hal.science/hal-00654500/file/Meyer2012_EcolIndic.pdf BibTex
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Thomas Spiegelberger, François Gillet, Bernard Amiaud, Aurélie Thébault, Pierre Mariotte, et al.. How do plant community ecologists consider the complementarity of observational, experimental and theoretical approaches?. Plant Ecology and Evolution, 2012, 145 (1), pp.4-12. ⟨10.5091/plecevo.2012.699⟩. ⟨hal-00768673⟩
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T. Spiegelberger, F. Gillet, B. Amiaud, A. Thébault, P. Mariotte, et al.. How do plant community ecologists consider the complementarity of observational, experimental and theoretical approaches?. Plant Ecology and Evolution, 2012, 145 (1), p. 4 - p. 12. ⟨10.5091/plecevo.2012.699⟩. ⟨hal-00716913⟩
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2011

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Floriane Bosch-Cano, Nadine Bernard, Bertrand Sudre, François Gillet, Michel Thibaudon, et al.. Human exposure to allergenic pollens: A comparison between urban and rural areas.. Environmental Research, 2011, 111 (5), pp.619-625. ⟨10.1016/j.envres.2011.04.001⟩. ⟨hal-00601406⟩
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Florian Kohler, Charlotte Vandenberghe, Ralph Imstepf, François Gillet. Restoration of threatened arable weed communities in abandoned mountainous crop fields. Restoration Ecology, 2011, 19 (101), pp.62-69. ⟨10.1111/j.1526-100X.2009.00641.x⟩. ⟨hal-00442516⟩
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E. Samaritani, J. Shrestha, B. Fournier, E. Frossard, F. Gillet, et al.. Heterogeneity of soil carbon pools and fluxes in a channelized and a restored floodplain section (Thur River, Switzerland). Hydrology and Earth System Sciences Discussions, 2011, 15 (6), pp.1757-1769. ⟨10.5194/hess-15-1757-2011⟩. ⟨hal-00654504⟩
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Rupert Seidl, Paulo M. Fernandes, Teresa F. Fonseca, François Gillet, Anna Maria Jönsson, et al.. Modelling natural disturbances in forest ecosystems: A review. Ecological Modelling, 2011, 222 (4), pp.903-924. ⟨10.1016/j.ecolmodel.2010.09.040⟩. ⟨hal-00530194⟩
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Aurélie Thébault, François Gillet, Heinz Müller-Schärer, Alexandre Buttler. Polyploidy and invasion success: trait trade-offs in native and introduced cytotypes of two Asteraceae species. Plant Ecology, 2011, 212 (2), pp.315-325. ⟨10.1007/s11258-010-9824-8⟩. ⟨hal-00582671⟩
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Ling-Ping Zhao, Ji-Suai Su, Gao-Lin Wu, François Gillet. Long-term effects of grazing exclusion on aboveground and belowground plant species diversity in a steppe of the Loess Plateau, China. Plant Ecology and Evolution, 2011, 144 (3), pp.313-320. ⟨10.5091/plecevo.2011.617⟩. ⟨hal-00654507⟩
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2010

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Matthew L. Carlson, Lindsey A. Flagstad, François Gillet, Edward A. D. Mitchell. Community development along a proglacial chronosequence: are above-ground and below-ground community structure controlled more by biotic than abiotic factors?. Journal of Ecology, 2010, 98 (5), pp.1084-1095. ⟨10.1111/j.1365-2745.2010.01699.x⟩. ⟨hal-00501619⟩
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François Gillet, Florian Kohler, Charlotte Vandenberghe, Alexandre Buttler. Effect of dung deposition on small-scale patch structure and seasonal vegetation dynamics in mountain pastures. Agriculture, Ecosystems & Environment, 2010, 135, pp.34-41. ⟨10.1016/j.agee.2009.08.006⟩. ⟨hal-00434296⟩
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François Gillet, Martina Peter, François Ayer, Rita Bütler, Simon Egli. Long-term dynamics of aboveground fungal communities in a subalpine Norway spruce forest under elevated nitrogen input. Oecologia, 2010, 164 (2), pp.499-510. ⟨10.1007/s00442-010-1668-3⟩. ⟨hal-00479642⟩
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B. Muys, J. Hynynen, M. Palahí, M.J. Lexer, M. Fabrika, et al.. Simulation tools for decision support to adaptive forest management in Europe. Forest Systems, 2010, 19 (SI), pp.86-99. ⟨hal-00558604⟩
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2009

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Pierre Rossi, François Gillet, Emmanuelle Rohrbach, Nouhou Diaby, Christof Holliger. Statistical assessment of variability of terminal restriction fragment length polymorphism analysis applied to complex microbial communities.. Applied and Environmental Microbiology, 2009, 75 (22), pp.7268-70. ⟨10.1128/AEM.00135-09⟩. ⟨hal-00434294⟩
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2008

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François Gillet. Modelling vegetation dynamics in heterogeneous pasture-woodland landscapes. Ecological Modelling, 2008, 217 (1-2), pp.1-18. ⟨10.1016/j.ecolmodel.2008.05.013⟩. ⟨hal-00357747⟩
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Nicolas Küffer, François Gillet, Béatrice Senn-Irlet, Daniel Job, Michel Aragno. Ecological determinants of fungal diversity on dead wood in European forests. Fungal Diversity, 2008, 30, pp.83-95. ⟨hal-00357745⟩
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Marco Moretti, Chantal Staehli, François Gillet. Determinants for the conservation of a vulnerable fire-dependent species at its marginal range. Plant Ecology, 2008, 199 (1), pp.89-98. ⟨10.1007/s11258-008-9414-1⟩. ⟨hal-00357746⟩
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2007

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François Freléchoux, François Gillet, Marco Meisser. Succession secondaire et perte de diversité végétale après réduction du broutage dans un pâturage boisé des Alpes centrales suisses. Botanica Helvetica, 2007, 117, pp.37-56. ⟨hal-00357743⟩
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Cédric Ratzé, François Gillet, Jean-Pierre Müller, Kilian Stoffel. Simulation modelling of ecological hierarchies in constructive dynamical systems. Ecological Complexity, 2007, 4 (1-2), pp.13-25. ⟨hal-00346759⟩
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2006

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Marylin Jossi, Nathalie Fromin, Sonia Tarnawski, Florian Kohler, François Gillet, et al.. How elevated pCO2 modifies total and metabolically active bacterial communities in the rhizosphere of two perennial grasses grown under field conditions. FEMS Microbiology Ecology, 2006, 55 (3), pp.339-350. ⟨10.1111/j.1574-6941.2005.00040.x⟩. ⟨hal-00442595⟩
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Florian Kohler, François Gillet, Jean-Michel Gobat, Alexandre Buttler. Effect of cattle activities on gap colonisation in mountain pastures. Folia Geobotanica, 2006, 41 (3), pp.289-304. ⟨hal-00442532⟩
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Florian Kohler, François Gillet, Stéphanie Reust, Helene H. Wagner, Fahzia Gadallah, et al.. Spatial and seasonal patterns of cattle habitat use in a mountain wooded pasture. Landscape Ecology, 2006, 21 (2), pp.281-295. ⟨10.1007/s10980-005-0144-7⟩. ⟨hal-00442544⟩
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2005

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Florent Kohler, Jérôme J. Hamelin, F. Gillet, J.M. Gobat, A. Buttler. Soil microbial community changes in wooded mountain pastures due to simulated effects of cattle grazing. Plant and Soil, 2005, 278 (1-2), pp.327-340. ⟨10.1007/s11104-005-8809-1⟩. ⟨hal-02681447⟩
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2003

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François Freléchoux, Alexandre Buttler, François Gillet, Jean-Michel Gobat, Fritz Schweingruber. Succession from bog pine (Pinus uncinata var. rotundata) to Norway spruce (Picea abies) stands in relation to anthropic factors in Les Saignolis bog, Jura Mountains, Switzerland. Annals of Forest Science, 2003, 60 (4), pp.347-356. ⟨10.1051/forest:2003025⟩. ⟨hal-00883705⟩
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2002

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Nathalie Fromin, J. Hamelin, S. Tarnawski, D. Roesti, K. Jourdain-Miserez, et al.. Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environmental Microbiology, 2002, 4 (11), pp.634-643. ⟨10.1046/j.1462-2920.2002.00358.x⟩. ⟨hal-02126963⟩
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1998

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J.-D. Gallandat, F. Gillet, O. Schneider, M. Brülhmann, J.-B. Wettstein. Les pâturages boisés du Parc Jurassien Vaudois dans le projet intégré GEST-MONTAGNE. Annales de zootechnie, 1998, 47 (5-6), pp.513-513. ⟨hal-00889768⟩
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Conference papers

2022

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Florence Mazier, Yael Schwertz, Stéphane Binet, Cédric Gaucherel, Didier Galop, et al.. Dynamics of ecosystem services and plant diversity over the past 200 years. International Symposium of LabEx DRIIHM 2022, LabEx DRIIHM OHMi Nunavik CNRS-InEE, Jun 2022, Nantes, France. ⟨10.34972/driihm-5c54de⟩. ⟨hal-03789512⟩
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Florence Mazier, Yael Schwertz, Stéphane Binet, Cédric Gaucherel, Didier Galop, et al.. Dynamics of ecosystem services and plant diversity over the past 200 years. Ohmpyr2022 : Séminaire de restitution des projets 2019-2021 de l'OHM Pyrénées Haut Vicdessos 2022, CNRS UMR 5602 GEODE, Sep 2022, Toulouse, France. ⟨10.34972/driihm-5c54de⟩. ⟨hal-03822072⟩
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2020

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Nicolas Chemidlin Prévost-Bouré, Sophie Sadet-Bourgeteau, Brie, Margot, Dumont, Julie, Campedelli, Mathilde, et al.. Évaluation des transferts microbiens du sol au lait en filière AOP Comté. Congrès international francophone 3R 2020, une 25ème édition numérique au plus près des grands enjeux des filières animales, Dec 2020, paris, France. ⟨hal-03103282⟩
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2019

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François Gillet, Thibault Moulin, Corentin Nicod. Disturbance modelling of plant community dynamics in managed grasslands. ISEM 2019, The International Society for Ecological Modelling Global Conference 2019, Oct 2019, Salzburg, Austria. ⟨hal-03533924⟩
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Thibault Moulin, Pierluigi Calanca, François Gillet. Modelling grassland biodiversity under climate change and implications for ecosystem services. 2nd International REKLIM Conference, Sep 2019, Berlin, Germany. ⟨hal-03534008⟩
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2018

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Thibault Moulin, Antoine Perasso, François Gillet. Sensitivity analysis of a grassland vegetation model: responses to drivers depend on species richness. MB2 2018, Mathematical Biology Modelling days of Besançon, Jun 2018, Besançon, France. ⟨hal-03534053⟩
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Corentin Nicod, Bérangère Leys, Brendan Greffier, Christophe Hennequin, Yorick Ferrez, et al.. Assessing biodiversity and management impacts in mountain pastures using diagnostic species. International Association for Vegetation Science 61st Annual Symposium, Jul 2018, Bozeman, Montana, United States. ⟨hal-03533991⟩
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José Zapata Carbonell, Carole Bégeot, Nicolas Carry, Flavien Choulet, François Gillet, et al.. Natural revegetation of a red gypsum dump. 15th International Phytotechnology Conference (IPC), Oct 2018, Novi-sad, Serbia. ⟨hal-03528797⟩
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2016

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François Gillet, Leslie Mauchamp, Pierre-Marie Badot, Arnaud Mouly. Biodiversité des prairies mésophiles en Franche-Comté : tendances récentes et défis pour l’avenir. Colloque « Du Reculet aux sommets alpins : quels changements sur les crêtes ? », Feb 2016, Gex, France. ⟨hal-03533936⟩
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2015

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François Gillet, Leslie Mauchamp, Arnaud Mouly, P. M. Badot. Recent vegetation changes in montane grasslands: a diachronic resampling study. Understanding broad-scale vegetation patterns., International Association for Vegetation Science, Jul 2015, Brno, Czech Republic. pp.135. ⟨hal-01211280⟩
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2014

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François Gillet. Commentaires préliminaires à une synthèse. Nouveaux défis de la modélisation : l’agro‐écologie, INRA, Feb 2014, Paris, France. pp.36-37. ⟨hal-01117802⟩
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Rémi Perronne, Leslie Mauchamp, Arnaud Mouly, François Gillet. Diversité taxonomique, phylogénétique et fonctionnelle de trois syntaxons des prairies permanentes. 10. congrès francophone d’écologie des communautés végétales ECOVEG 10 : Ecologie des Communautés Végétales, Apr 2014, Lyon, France. ⟨hal-02799354⟩
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2013

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François Gillet, Leslie Mauchamp, Adeline Rouzet. Regional rarity versus local scarcity in plant communities: Impact of species removal on model performance in constrained ordination. 56th IAVS Symposium, 2013, Tartu, Estonia. pp.73. ⟨hal-00927303⟩
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Leslie Mauchamp, Arnaud Mouly, François Gillet. Contrasted reponses of taxonomic, phylogenetic and functional diversity to grassland management. 56th IAVS Symposium, 2013, Tartu, Estonia. pp.152. ⟨hal-00927301⟩
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2012

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François Gillet, Alexander Peringer. Dynamic modelling of silvopastoral landscape structure: Past reconstruction and scenarios for future climate and land use. COST FP0603 Final Meeting, Mar 2012, Pierroton, France. ⟨hal-00814269⟩
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François Gillet, Alexander Peringer. Dynamic modelling of silvopastoral landscape structure: Scenarios for future climate and land use. Managing Resources of a Limited Planet: Pathways and Visions under Uncertainty, 2012, Leipzig, Germany. pp.860-867. ⟨hal-00814266⟩
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Bart Muys, J. Hynynen, M. Palahí, M.J. Lexer, M. Fabrika, et al.. Simulation tools for decision support to adaptive forest management in Europe. COST FP0603 Final Meeting, Mar 2012, Pierroton, France. ⟨hal-00814281⟩
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A. Peringer, F. Gillet, S. Siehoff, T. Spiegelberger, A. Buttler. Climate‐driven landscape patterns in pasture‐woodland landscapes of the Swiss Jura. 42nd Annual Meeting of the Ecological Society of Germany, Austria and Switzerland, Sep 2012, Lüneburg, Germany. pp.295-295. ⟨hal-02597458⟩
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Rupert Seidl, P.M. Fernandes, T.F. Fonseca, François Gillet, A.M. Jönsson, et al.. Concepts and challenges in modelling natural disturbances in forest ecosystems. COST FP0603 Final Meeting, Mar 2012, Pierroton, France. ⟨hal-00814277⟩
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2010

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T. Spiegelberger, K. Gavazov, F. Gillet, A. Buttler. Subalpine ecosystems of the Swiss Jura mountains in a changing climate. Functional significance of mountain biodiversity, Jul 2010, Chandolins, Switzerland. pp.1. ⟨hal-02594199⟩
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Book sections

2023

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François Gillet. Prédire le futur des écosystèmes jurassiens… est-ce raisonnable ?. Michel Magny; Hervé Richard. Histoire du climat dans les Montagnes du Jura – Écosystèmes et sociétés face à un avenir incertain, Editions de La Belle Etoile, pp.218-224, 2023, 978-2-491372-31-6. ⟨hal-04310200⟩
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Valentine Python, François Gillet. Les services écosystémiques de la forêt jurassienne face au réchauffement climatique. Michel Magny; Hervé Richard. Histoire du climat dans les Montagnes du Jura – Écosystèmes et sociétés face à un avenir incertain, Editions de La Belle Etoile, pp.209-212, 2023, 978-2-491372-31-6. ⟨hal-04310251⟩
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2017

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Victor Frossard, Bruno Saussereau, Antoine Perasso, François Gillet. What is the robustness of early warning signals to temporal aggregation?. Using Paleolimnology for Management and Restoration of Lakes, Frontiers Media SA, 2017, Frontiers Research Topics, ⟨10.3389/978-2-88945-091-6⟩. ⟨hal-03533904⟩
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2009

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Alexandre Buttler, Florian Kohler, François Gillet. The Swiss mountain wooded pastures: patterns and processes. Rigueiro-Rodriguez A., McAdam J. & Mosquera-Losada M.R. Agroforestry in Europe: Current Status and Future Prospects, Springer, pp.377-396, 2009, Advances in Agroforestry. ⟨hal-00357749⟩
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2008

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François Gillet. Ecological Models: Plant Competition. Jørgensen S.E. & Fath B.D. Encyclopedia of Ecology, 1st Edition, Vol. 4, Elsevier, pp.2783-2793, 2008. ⟨hal-00357748⟩
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Books

2023

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Daniel Borcard, François Gillet, Pierre Legendre. Numerical Ecology with R, Japanese edition. Kyoritsu Shuppan Co. Ltd, 496 p., 2023. ⟨hal-04310142⟩
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2020

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Daniel Borcard, François Gillet, Pierre Legendre. Numerical Ecology with R, Second Chinese Edition. Higher Education Press, 2020. ⟨hal-03092614⟩
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2018

ref_biblio
Daniel Borcard, François Gillet, Pierre Legendre. Numerical Ecology with R. Second Edition. Springer, pp.440, 2018, Use R! series, 978-3-319-71403-5. ⟨10.1007/978-3-319-71404-2⟩. ⟨hal-01779757⟩
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2014

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Daniel Borcard, François Gillet, Pierre Legendre. Numerical Ecology with R (Chinese Edition). Higher Education Press, 275 p., 2014, 978-7040394726. ⟨hal-01117803⟩
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2013

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Leslie Mauchamp, François Gillet, Arnaud Mouly, Pierre-Marie Badot. Les prairies : biodiversité et services écosystémiques. CNAOL-UFC. Presses universitaires de Franche-Comté, pp.134, 2013, Pratiques et Techniques, 978-2-84867-437-7. ⟨hal-00768735⟩
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2011

ref_biblio
Daniel Borcard, François Gillet, Pierre Legendre. Numerical Ecology with R. Springer, pp.302, 2011, Use R!, 978-1-4419-7975-9. ⟨hal-00530195⟩
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Yorick Ferrez, Gilles Bailly, Thérèse Beaufils, Rémi Collaud, Michel Caillet, et al.. Synopsis des groupements végétaux de Franche-Comté. Société botanique de Franche-Comté, Conservatoire botanique national de Franche-Comté, pp.282, 2011, Les Nouvelles Archives de la Flore jurassienne et du nord-est de la France, 1765-0674. ⟨hal-00683776⟩
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Poster communications

2016

ref_biblio
Thibault Moulin, Antoine Perasso, François Gillet. DynaGraM, Dynamic Grassland Model - Predicting changes in plant community composition and ecosystem function. MPDE 2016, Models in Population Dynamics and Ecology, Sep 2016, Marseille, France. ⟨hal-03534122⟩
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2015

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François Gillet. Phytobase: a tool for the integrated synusial approach of vegetation classification at regional to national scale. Chytry M; Zeleny D; Hettenbergerova E. Understanding broad-scale vegetation patterns, Jul 2015, Brno, Czech Republic. 58th Symposium of the International Association for Vegetation Science (IAVS) – Understanding broad-scale vegetation patterns, Brno, République Tchèque, pp.136, 2015. ⟨hal-01211283⟩
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2011

ref_biblio
A. Peringer, F. Gillet, T. Spiegelberger, A. Buttler. Vegetation dynamics in pasture-woodland landscapes under climate change. 41st Annual meeting of the Ecological Society of Germany, Sep 2011, Oldenburg, Germany. pp.1, 2011. ⟨hal-02595496⟩
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Preprints, Working Papers, ...

2014

ref_biblio
François Gillet. Guide d'utilisation de Phytobase (version 8.3), base de données phytosociologiques. 2014. ⟨hal-01306418⟩
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2010

ref_biblio
François Gillet. Guide d'utilisation de Phytobase 8, base de données phytosociologiques. 2010. ⟨hal-00558605⟩
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